C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066987 Galnt10-001 ENSMUSG00000020520 10090 + 11:57645442-57787514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066987
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066987 6.478±0.76 18.757±2.13 7.395±0.57 4.002±1.98 6.409±3.10 34.525±5.64 1.986±0.16 4.963±0.14 5.151±4.22 3.851±0.63 1.428±0.41 13.190±2.03 5.493±0.88 9.719±2.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C8 CIL_0009C8_0002 VISTA 11:57350678-57952744
CIL_00094E CIL_00094E_0002 VISTA 11:57350713-57952688
CIL_0001UE CIL_0001UE_0002 CGP 11:57518664-57787514
CIL_00099I CIL_00099I_0002 VISTA 11:57547462-58147793
CIL_00088D CIL_00088D_0002 VISTA 11:57627590-58231336
CIL_0001UJ CIL_0001UJ_0002 CGP 11:57645442-57810217

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 IEA Golgi apparatus
GO:0006493 IDA protein O-linked glycosylation
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297107 GALNT10-001 protein_coding Homo_sapiens 0 2309
ENST00000377661 GALNT10-003 protein_coding Homo_sapiens 0 1262
ENST00000425427 GALNT10-005 protein_coding Homo_sapiens 0 1402
ENST00000517958 GALNT10-002 retained_intron Homo_sapiens 0 893
ENST00000519235 GALNT10-010 processed_transcript Homo_sapiens 0 294
ENST00000519544 GALNT10-009 processed_transcript Homo_sapiens 0 712
ENST00000519571 GALNT10-008 processed_transcript Homo_sapiens 0 649
ENST00000520647 GALNT10-004 nonsense_mediated_decay Homo_sapiens 0 1018
ENST00000521781 GALNT10-007 processed_transcript Homo_sapiens 0 699
ENST00000521786 GALNT10-006 processed_transcript Homo_sapiens 0 272

Loading