C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypeptide N-acetylgalactosaminyltransferase 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425427 GALNT10-005 ENSG00000164574 9606 + 5:154190730-154389581 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderENST00000425427
Transcript ID Bladder
ENST00000425427 1.323±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C8 CIL_0009C8_0001 VISTA 5:153896309-154498445
CIL_00094E CIL_00094E_0001 VISTA 5:153896347-154498404
CIL_0001UD CIL_0001UD_0001 CGP 5:153990128-154220478
CIL_0001UE CIL_0001UE_0001 CGP 5:154038906-154420984
CIL_0001UJ CIL_0001UJ_0001 CGP 5:154190730-154461054

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IEA polypeptide N-acetylgalactosaminyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066987 Galnt10-001 protein_coding Mus_musculus 0 1402
ENSMUST00000108846 Galnt10-002 protein_coding Mus_musculus 0 571
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000002 73

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