C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor GTPase activating protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067215 Arfgap3-201 ENSMUSG00000054277 10090 - 15:83299740-83350247 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067215
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067215 10.297±4.12 8.800±0.48 26.112±1.69 9.511±1.79 7.481±1.47 43.549±1.98 3.545±0.59 8.010±0.87 3.923±2.04 7.849±3.14 1.201±0.53 14.120±1.81 13.805±2.02 34.255±7.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LG CIL_0008LG_0002 VISTA 15:83223007-83824071
CIL_00040L CIL_00040L_0002 CGP 15:83226726-83350247
CIL_0004U5 CIL_0004U5_0002 CGP 15:83299740-83464606

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005829 ISS cytosol
GO:0008060 ISS ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0009306 ISS protein secretion
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263245 ARFGAP3-001 protein_coding Homo_sapiens 0 1142
ENST00000437119 ARFGAP3-010 protein_coding Homo_sapiens 0 335
ENST00000454099 ARFGAP3-003 protein_coding Homo_sapiens 0 340
ENST00000493606 ARFGAP3-002 retained_intron Homo_sapiens 0 281

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