C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation specificity factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067284 Cpsf3-201 ENSMUSG00000054309 10090 + 12:21286297-21315056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067284
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067284 14.271±4.52 9.243±4.28 24.158±9.23 23.045±14.17 7.711±2.05 7.011±2.57 6.999±1.85 10.501±3.30 14.104±8.50 10.747±1.29 4.619±1.18 10.348±9.84 13.964±2.82 11.468±1.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057K CIL_00057K_0002 CGP 12:21240825-21315056
CIL_00057M CIL_00057M_0002 CGP 12:21286297-21323605

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0004521 IDA endoribonuclease activity
GO:0005515 IEA protein binding
GO:0005847 ISS mRNA cleavage and polyadenylation specificity factor complex
GO:0006398 ISS histone mRNA 3'-end processing
GO:0008409 IDA 5'-3' exonuclease activity
GO:0030529 IEA ribonucleoprotein complex
GO:0046872 IEA metal ion binding
GO:0090305 IDA nucleic acid phosphodiester bond hydrolysis
GO:0090502 IDA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000238112 CPSF3-001 protein_coding Homo_sapiens 0 2575
ENST00000460593 CPSF3-002 protein_coding Homo_sapiens 0 2462
ENST00000475482 CPSF3-003 protein_coding Homo_sapiens 0 595
ENST00000489629 CPSF3-004 retained_intron Homo_sapiens 0 625

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