C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation specific factor 3, 73kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000238112 CPSF3-001 ENSG00000119203 9606 + 2:9423568-9473101 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000238112
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000238112 8.610±0.00 9.140±0.00 1.779±0.00 4.483±1.00 6.710±3.62 4.453±0.82 2.665±2.32 6.650±3.74 4.334±0.15 2.286±0.30 3.610±2.61 6.571±2.10 9.355±2.67 23.851±6.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057K CIL_00057K_0001 CGP 2:9403475-9473101
CIL_00057M CIL_00057M_0001 CGP 2:9423568-9496543

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003723 ISS RNA binding
GO:0004521 ISS endoribonuclease activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005847 IDA mRNA cleavage and polyadenylation specificity factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006378 TAS mRNA polyadenylation
GO:0006379 TAS mRNA cleavage
GO:0006398 IDA histone mRNA 3'-end processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0008409 ISS 5'-3' exonuclease activity
GO:0010467 TAS gene expression
GO:0030529 IEA ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0046872 IEA metal ion binding
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067284 Cpsf3-201 protein_coding Mus_musculus 0 2575

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