C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00057M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119203-ENSG00000134330 CGP 9606 2:9423568-9496543
GeneTranscriptPositionBiotype
ENSG00000119203 (CPSF3)
cleavage and polyadenylation specific factor 3, 73kDa 		ENST00000238112 (CPSF3-001) 9423568-9473101 protein_coding
ENST00000460593 (CPSF3-002) 9423884-9473092 protein_coding
ENST00000475482 (CPSF3-003) 9423651-9432688 protein_coding
ENST00000489403 (CPSF3-005) 9456977-9473098 processed_transcript
ENST00000489629 (CPSF3-004) 9441730-9448350 retained_intron
ENSG00000134330 (IAH1)
isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 		ENST00000351760 (IAH1-008) 9474578-9488462 nonsense_mediated_decay
ENST00000470914 (IAH1-001) 9474537-9489742 protein_coding
ENST00000481367 (IAH1-005) 9474575-9496543 protein_coding
ENST00000481688 (IAH1-009) 9474858-9488314 protein_coding
ENST00000482918 (IAH1-007) 9473818-9488444 protein_coding
ENST00000484826 (IAH1-014) 9481284-9488622 retained_intron
ENST00000487850 (IAH1-013) 9480871-9488495 processed_transcript
ENST00000489468 (IAH1-010) 9475022-9488237 processed_transcript
ENST00000490621 (IAH1-015) 9488145-9489029 processed_transcript
ENST00000492223 (IAH1-002) 9474539-9488457 nonsense_mediated_decay
ENST00000495050 (IAH1-004) 9474564-9486829 retained_intron
ENST00000495494 (IAH1-012) 9475674-9484512 processed_transcript
ENST00000495797 (IAH1-011) 9475055-9484467 protein_coding
ENST00000496603 (IAH1-006) 9473658-9484548 protein_coding
ENST00000497473 (IAH1-003) 9474530-9488811 protein_coding
ENSG00000151694 (ADAM17)
ADAM metallopeptidase domain 17 		ENST00000310823 (ADAM17-001) 9488486-9555788 protein_coding
ENST00000478059 (ADAM17-002) 9527501-9555774 retained_intron
ENST00000497134 (ADAM17-003) 9521596-9555792 protein_coding
ENST00000618923 (ADAM17-201) 9521598-9555792 protein_coding
CIL_00057M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000054309-ENSMUSG00000062054 CGP 10090 12:21286297-21323605
GeneTranscriptPositionBiotype
ENSMUSG00000052593 (Adam17)
a disintegrin and metallopeptidase domain 17 		ENSMUST00000064536 (Adam17-001) 21323517-21373632 protein_coding
ENSMUST00000101551 (Adam17-002) 21323509-21373593 protein_coding
ENSMUST00000127974 (Adam17-003) 21323517-21373593 nonsense_mediated_decay
ENSMUST00000132339 (Adam17-008) 21330073-21332521 retained_intron
ENSMUST00000141799 (Adam17-005) 21325526-21329290 processed_transcript
ENSMUST00000142092 (Adam17-009) 21349903-21373534 nonsense_mediated_decay
ENSMUST00000145118 (Adam17-007) 21323517-21373593 nonsense_mediated_decay
ENSMUST00000155115 (Adam17-004) 21327980-21344229 retained_intron
ENSMUSG00000054309 (Cpsf3)
cleavage and polyadenylation specificity factor 3 		ENSMUST00000067284 (Cpsf3-201) 21286297-21315056 protein_coding
ENSMUSG00000062054 (Iah1)
isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 		ENSMUST00000076813 (Iah1-201) 21316392-21323605 protein_coding
ENSMUSG00000070166 (Gm25821)
predicted gene, 25821 		ENSMUST00000093657 (Gm25821-201) 21287927-21288059 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00057M_0001ENSG00000119203ENST00000238112ENST00000460593ENST00000475482ENST00000489403ENST00000489629ENSG00000134330ENST00000351760ENST00000470914ENST00000481367ENST00000481688ENST00000482918ENST00000484826ENST00000487850ENST00000489468ENST00000490621ENST00000492223ENST00000495050ENST00000495494ENST00000495797ENST00000496603ENST00000497473ENSG00000151694ENST00000310823ENST00000478059ENST00000497134ENST00000618923CIL_00057M_0002ENSMUSG00000052593ENSMUST00000064536ENSMUST00000101551ENSMUST00000127974ENSMUST00000132339ENSMUST00000141799ENSMUST00000142092ENSMUST00000145118ENSMUST00000155115ENSMUSG00000054309ENSMUST00000067284ENSMUSG00000062054ENSMUST00000076813ENSMUSG00000070166ENSMUST00000093657
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00057M_0001ENSG00000119203ENST00000238112ENST00000460593ENST00000475482ENST00000489403ENST00000489629ENSG00000134330ENST00000351760ENST00000481688ENST00000482918ENST00000484826ENST00000487850ENST00000492223ENST00000495050ENST00000497473ENSG00000151694ENST00000310823ENST00000497134ENST00000618923CIL_00057M_0002ENSMUSG00000052593ENSMUST00000064536ENSMUST00000101551ENSMUST00000127974ENSMUST00000141799ENSMUST00000145118ENSMUSG00000054309ENSMUST00000067284ENSMUSG00000062054ENSMUST00000076813ENSMUSG00000070166ENSMUST00000093657
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119203 ENST00000238112 8.610±0.00 9.140±0.00 1.779±0.00 4.483±1.00 6.710±3.62 4.453±0.82 2.665±2.32 6.650±3.74 4.334±0.15 2.286±0.30 3.610±2.61 6.571±2.10 9.355±2.67 23.851±6.16
ENST00000460593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.093±0.00
ENST00000475482 N/A N/A 1.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.093±0.00 41.854±0.00 122.870±0.00
ENST00000489629 N/A N/A N/A N/A 3.561±0.00 N/A N/A N/A N/A N/A 5.115±0.00 N/A N/A N/A
ENSG00000134330 ENST00000351760 N/A N/A N/A N/A 18.614±0.00 10.026±0.00 10.242±0.00 11.190±0.00 6.475±0.00 N/A 13.295±0.00 N/A 13.358±0.00 26.497±0.00
ENST00000470914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.561±0.00
ENST00000482918 N/A N/A N/A 9.421±0.00 N/A 7.332±0.00 8.159±0.00 N/A 3.677±0.00 N/A N/A 15.916±1.35 11.945±1.73 N/A
ENST00000484826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.862±0.00 12.420±0.00 N/A N/A
ENST00000487850 N/A N/A N/A 11.820±0.00 N/A 9.001±0.00 N/A N/A 5.211±0.00 N/A N/A N/A N/A 25.690±0.00
ENST00000489468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492223 N/A N/A N/A N/A N/A N/A 7.906±0.00 11.559±0.00 4.513±0.00 23.961±0.00 N/A N/A N/A N/A
ENST00000495050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.947±0.00 N/A N/A N/A
ENST00000495494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497473 N/A N/A N/A 4.222±0.00 N/A N/A 2.636±0.00 2.458±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000151694 ENST00000310823 14.242±0.00 8.481±0.00 0.623±0.00 3.175±2.08 6.607±0.00 2.929±2.09 2.439±1.41 3.668±0.00 1.883±0.23 8.670±1.22 2.781±1.90 6.401±0.72 8.428±1.54 7.970±1.61
ENST00000478059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497134 N/A N/A N/A N/A N/A 2.032±0.00 N/A N/A 2.205±0.00 N/A N/A N/A N/A N/A
ENST00000618923 N/A N/A 1.285±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000052593 ENSMUST00000064536 5.064±0.49 N/A 10.513±0.39 7.457±5.93 5.674±0.00 2.281±0.00 5.084±2.33 7.753±0.47 6.954±1.47 7.331±0.00 3.188±0.40 9.764±4.21 12.027±1.97 3.546±1.13
ENSMUST00000101551 N/A N/A N/A N/A N/A 3.392±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127974 9.273±1.84 16.885±2.73 N/A N/A 11.055±2.56 10.009±3.49 N/A 8.840±0.00 N/A 14.261±4.11 N/A 13.553±3.06 2.491±0.00 0.791±0.00
ENSMUST00000132339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141799 N/A N/A N/A N/A 35.190±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145118 N/A N/A N/A N/A 4.189±0.21 2.242±0.00 N/A N/A N/A N/A N/A 8.590±5.56 N/A N/A
ENSMUST00000155115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000054309 ENSMUST00000067284 14.271±4.52 9.243±4.28 24.158±9.23 23.045±14.17 7.711±2.05 7.011±2.57 6.999±1.85 10.501±3.30 14.104±8.50 10.747±1.29 4.619±1.18 10.348±9.84 13.964±2.82 11.468±1.05
ENSMUSG00000062054 ENSMUST00000076813 65.926±7.49 55.666±11.00 66.184±13.20 16.061±6.38 42.353±6.79 27.254±3.81 15.051±1.71 240.857±15.64 105.741±65.30 54.328±6.65 4.214±0.00 41.983±5.19 45.320±16.29 12.494±0.42
ENSMUSG00000070166 ENSMUST00000093657 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.232±6.00 15.222±0.00 N/A

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