C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000219334 SMPD3-001 ENSG00000103056 9606 - 16:68358325-68448688 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryTestisENST00000219334
Transcript ID Brain Ovary Testis
ENST00000219334 3.715±1.53 3.877±0.92 3.669±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CE CIL_0000CE_0001 CGP 16:68284503-68358563
CIL_0000C5 CIL_0000C5_0001 CGP 16:68310974-68448688
CIL_0005WZ CIL_0005WZ_0001 CGP 16:68358325-68576072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000137 IEA Golgi cis cisterna
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0004767 IEA sphingomyelin phosphodiesterase activity
GO:0005794 IEA Golgi apparatus
GO:0005886 TAS plasma membrane
GO:0006665 TAS sphingolipid metabolic process
GO:0006684 IEA sphingomyelin metabolic process
GO:0006685 TAS sphingomyelin catabolic process
GO:0006687 TAS glycosphingolipid metabolic process
GO:0007049 IEA cell cycle
GO:0030072 IEA peptide hormone secretion
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067512 Smpd3-201 protein_coding Mus_musculus 0 2850

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