C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 62
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067582 Tmem62-001 ENSMUSG00000054484 10090 + 2:120977017-121007852 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067582
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067582 2.000±0.76 5.764±2.95 1.655±0.00 2.180±0.56 2.284±1.08 2.493±0.75 0.687±0.19 3.088±1.26 1.802±1.06 3.734±1.80 0.751±0.11 1.722±0.70 2.030±1.16 0.567±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YC CIL_0005YC_0002 CGP 2:120977017-121016904

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260403 TMEM62-001 protein_coding Homo_sapiens 0 2117
ENST00000564494 TMEM62-002 protein_coding Homo_sapiens 0 1297
ENST00000564698 TMEM62-012 protein_coding Homo_sapiens 0 529
ENST00000565291 TMEM62-004 protein_coding Homo_sapiens 0 414
ENST00000567441 TMEM62-007 nonsense_mediated_decay Homo_sapiens 0 366
ENST00000568182 TMEM62-008 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000568197 TMEM62-009 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000569535 TMEM62-005 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000569897 TMEM62-013 retained_intron Homo_sapiens 0 370
ENST00000569926 TMEM62-006 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000570109 TMEM62-010 retained_intron Homo_sapiens 0 462

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