C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interleukin enhancer binding factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067646 Ilf3-201 ENSMUSG00000032178 10090 + 9:21368019-21405361 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067646
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067646 8.910±5.45 7.955±2.85 9.102±0.06 24.136±5.40 5.851±3.42 5.780±2.23 4.292±0.93 6.390±1.76 5.971±4.84 8.444±2.83 3.428±1.11 21.460±7.98 12.032±2.85 20.015±3.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000492 CIL_000492_0002 CGP 9:21337828-21405361
CIL_0002S9 CIL_0002S9_0002 CGP 9:21368019-21420277

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003725 IEA double-stranded RNA binding
GO:0005515 IEA protein binding
GO:0005634 ISO nucleus
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006468 IDA protein phosphorylation
GO:0006479 ISA protein methylation
GO:0016020 IEA membrane
GO:0017148 IMP negative regulation of translation
GO:0030529 ISS ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0045071 IMP negative regulation of viral genome replication
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000250241 ILF3-003 protein_coding Homo_sapiens 0 2435
ENST00000407004 ILF3-001 protein_coding Homo_sapiens 0 2453
ENST00000449870 ILF3-201 protein_coding Homo_sapiens 0 3291
ENST00000585835 ILF3-020 nonsense_mediated_decay Homo_sapiens 0 697
ENST00000586544 ILF3-012 processed_transcript Homo_sapiens 0 451
ENST00000587505 ILF3-025 nonsense_mediated_decay Homo_sapiens 0 433
ENST00000587840 ILF3-026 nonsense_mediated_decay Homo_sapiens 0 739
ENST00000587928 ILF3-008 retained_intron Homo_sapiens 0 1611
ENST00000587941 ILF3-017 protein_coding Homo_sapiens 0 399
ENST00000588657 ILF3-006 protein_coding Homo_sapiens 0 2976
ENST00000589052 ILF3-024 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000589173 ILF3-021 retained_intron Homo_sapiens 6e-33 145
ENST00000589416 ILF3-019 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000589485 ILF3-018 nonsense_mediated_decay Homo_sapiens 0 654
ENST00000589600 ILF3-016 protein_coding Homo_sapiens 0 632
ENST00000589998 ILF3-002 protein_coding Homo_sapiens 0 2503
ENST00000590009 ILF3-014 protein_coding Homo_sapiens 0 1029
ENST00000590261 ILF3-005 protein_coding Homo_sapiens 0 3229
ENST00000590869 ILF3-023 protein_coding Homo_sapiens 0 252
ENST00000591649 ILF3-011 retained_intron Homo_sapiens 0 841
ENST00000592763 ILF3-004 protein_coding Homo_sapiens 0 2342
ENST00000593061 ILF3-022 protein_coding Homo_sapiens 0 250

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