C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: atlastin GTPase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068282 Atl2-201 ENSMUSG00000059811 10090 - 17:79848392-79896028 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068282
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068282 13.722±2.31 23.065±3.49 9.586±0.32 5.516±1.85 11.906±1.65 14.378±4.34 9.779±0.87 12.520±0.74 18.550±6.72 7.261±2.32 47.987±10.23 12.745±4.66 11.094±4.09 11.656±3.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IO CIL_0002IO_0002 CGP 17:79706953-79896123
CIL_0002IR CIL_0002IR_0002 CGP 17:79848392-80062334

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005783 ISS endoplasmic reticulum
GO:0006184 IEA GTP catabolic process
GO:0007029 ISS endoplasmic reticulum organization
GO:0007030 ISS Golgi organization
GO:0016020 IEA membrane
GO:0016021 ISS integral component of membrane
GO:0042802 ISS identical protein binding
GO:0051260 ISS protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378954 ATL2-002 protein_coding Homo_sapiens 0 3821
ENST00000402054 ATL2-005 protein_coding Homo_sapiens 0 2361
ENST00000405384 ATL2-003 nonsense_mediated_decay Homo_sapiens 0 2362
ENST00000406122 ATL2-013 protein_coding Homo_sapiens 0 1683
ENST00000416222 ATL2-006 nonsense_mediated_decay Homo_sapiens 6e-38 161
ENST00000419554 ATL2-001 protein_coding Homo_sapiens 0 2196
ENST00000443098 ATL2-016 protein_coding Homo_sapiens 0 468
ENST00000449130 ATL2-012 protein_coding Homo_sapiens 0 459
ENST00000451483 ATL2-007 protein_coding Homo_sapiens 6e-38 161
ENST00000452935 ATL2-004 protein_coding Homo_sapiens 0 2355
ENST00000456736 ATL2-011 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000472097 ATL2-009 retained_intron Homo_sapiens 0 723
ENST00000474535 ATL2-010 retained_intron Homo_sapiens 0 566
ENST00000477642 ATL2-014 retained_intron Homo_sapiens 0 778
ENST00000489896 ATL2-015 retained_intron Homo_sapiens 0 675

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