C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068505 Capn2-201 ENSMUSG00000026509 10090 - 1:182467256-182517495 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068505
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068505 43.506±7.98 11.344±5.28 35.672±8.11 16.610±4.17 22.070±4.01 15.378±1.41 13.010±1.00 15.737±1.76 6.161±1.79 34.794±2.27 15.067±0.90 16.161±11.52 32.966±5.08 1.510±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MP CIL_0005MP_0002 CGP 1:182467256-182632352

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IDA chromatin
GO:0001666 IEA response to hypoxia
GO:0001824 IMP blastocyst development
GO:0004198 TAS calcium-dependent cysteine-type endopeptidase activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005829 ISS cytosol
GO:0005886 ISS plasma membrane
GO:0005925 IEA focal adhesion
GO:0006508 IDA proteolysis
GO:0007520 IMP myoblast fusion
GO:0008092 IEA cytoskeletal protein binding
GO:0008233 IDA peptidase activity
GO:0016540 IEA protein autoprocessing
GO:0030425 IEA dendrite
GO:0031143 IEA pseudopodium
GO:0045121 ISS membrane raft
GO:0046982 IEA protein heterodimerization activity
GO:0051493 IEA regulation of cytoskeleton organization
GO:0070062 IEA extracellular vesicular exosome
GO:0071230 IDA cellular response to amino acid stimulus
GO:0097038 IEA perinuclear endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295006 CAPN2-001 protein_coding Homo_sapiens 0 2713
ENST00000398776 CAPN11-001 protein_coding Homo_sapiens 0 228
ENST00000433674 CAPN2-201 protein_coding Homo_sapiens 0 2326
ENST00000434648 CAPN2-009 protein_coding Homo_sapiens 0 540
ENST00000474026 CAPN2-002 processed_transcript Homo_sapiens 0 544
ENST00000480581 CAPN2-006 processed_transcript Homo_sapiens 0 466
ENST00000487223 CAPN2-003 processed_transcript Homo_sapiens 0 1016
ENST00000492565 CAPN2-011 processed_transcript Homo_sapiens 5e-26 121
ENST00000532171 CAPN11-005 protein_coding Homo_sapiens 0.0000000000006 79

Loading