C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain 2, (m/II) large subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295006 CAPN2-001 ENSG00000162909 9606 + 1:223712332-223776018 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295006
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295006 102.339±0.00 57.311±0.00 10.202±0.00 14.442±10.67 43.551±23.43 33.580±14.35 16.540±12.62 100.807±0.00 9.231±0.59 41.842±26.00 30.233±26.26 45.773±27.45 41.319±9.72 25.585±17.95

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0001666 IEA response to hypoxia
GO:0001824 IEA blastocyst development
GO:0004198 ISS:IEA calcium-dependent cysteine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 ISS cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006508 ISS:IEA proteolysis
GO:0007520 IEA myoblast fusion
GO:0008092 NAS cytoskeletal protein binding
GO:0008233 IEA peptidase activity
GO:0008234 TAS cysteine-type peptidase activity
GO:0016540 IEA protein autoprocessing
GO:0030425 ISS dendrite
GO:0030864 TAS cortical actin cytoskeleton
GO:0031143 IDA pseudopodium
GO:0045121 IDA membrane raft
GO:0046982 IEA protein heterodimerization activity
GO:0051493 TAS regulation of cytoskeleton organization
GO:0051603 IC proteolysis involved in cellular protein catabolic process
GO:0070062 IDA extracellular vesicular exosome
GO:0071230 ISS cellular response to amino acid stimulus
GO:0097038 IDA perinuclear endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068505 Capn2-201 protein_coding Mus_musculus 0 2713
ENSMUST00000168514 Capn8-202 protein_coding Mus_musculus 0 398
ENSMUST00000048941 Capn8-201 protein_coding Mus_musculus 0 398
ENSDART00000044085 CAPN2 (3 of 4)-201 protein_coding Danio_rerio 0 392
ENSDART00000077958 capn2b-001 protein_coding Danio_rerio 0 313
ENSDART00000130493 capn2b-002 protein_coding Danio_rerio 0 307
ENSDART00000105101 capn2b-201 protein_coding Danio_rerio 0 292
ENSDART00000105099 capn1b-001 protein_coding Danio_rerio 0 226

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