C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal guanine nucleotide exchange factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068681 Ngef-001 ENSMUSG00000026259 10090 - 1:87476834-87573870 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000068681
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000068681 0.903±0.16 0.040±0.01 0.570±0.00 0.428±0.15 7.687±1.08 0.159±0.07 11.154±2.50 5.983±2.30 1.602±0.40 2.093±1.03 0.236±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HR CIL_0003HR_0002 CGP 1:87470271-87573870
CIL_0003HS CIL_0003HS_0002 CGP 1:87476834-87597845

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0009987 IDA cellular process
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264051 NGEF-001 protein_coding Homo_sapiens 0 2054
ENST00000373552 NGEF-003 protein_coding Homo_sapiens 0 2015
ENST00000409079 NGEF-002 protein_coding Homo_sapiens 0 625
ENST00000424488 NGEF-008 protein_coding Homo_sapiens 0 669
ENST00000461944 NGEF-007 retained_intron Homo_sapiens 0 209
ENST00000489127 NGEF-009 retained_intron Homo_sapiens 0 556

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