C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin beta 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069345 Itgb5-002 ENSMUSG00000022817 10090 + 16:33829677-33949153 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaENSMUST00000069345
Transcript ID Ovary Placenta
ENSMUST00000069345 16.891±0.00 15.835±8.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HE CIL_0008HE_0002 VISTA 16:33792411-34395018

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005178 IPI integrin binding
GO:0005515 IEA protein binding
GO:0005925 IDA focal adhesion
GO:0007155 IEA cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IEA integrin complex
GO:0009986 IEA cell surface
GO:0031252 IDA cell leading edge
GO:0034684 IEA integrin alphav-beta5 complex
GO:0035987 IEA endodermal cell differentiation
GO:0043149 IEA stress fiber assembly
GO:0043235 ISO receptor complex
GO:0070062 IEA extracellular vesicular exosome
GO:0090136 IEA epithelial cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296181 ITGB5-001 protein_coding Homo_sapiens 0 2545
ENST00000460797 ITGB5-002 retained_intron Homo_sapiens 2e-22 111
ENST00000465464 ITGB5-003 nonsense_mediated_decay Homo_sapiens 0 736
ENST00000474838 ITGB5-007 processed_transcript Homo_sapiens 0 412
ENST00000476988 ITGB5-009 processed_transcript Homo_sapiens 0 444
ENST00000481591 ITGB5-008 protein_coding Homo_sapiens 0 870
ENST00000483168 ITGB5-004 protein_coding Homo_sapiens 0 549
ENST00000488466 ITGB5-010 protein_coding Homo_sapiens 0 712
ENST00000496703 ITGB5-011 protein_coding Homo_sapiens 0 536
ENST00000608107 ITGB5-015 protein_coding Homo_sapiens 0 481
ENST00000608657 ITGB5-013 protein_coding Homo_sapiens 0 809

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