C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: integrin beta 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022817 Itgb5 10090 + 16:33829665-33949153 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069345 Itgb5-002 33829677-33949153 protein_coding
  ENSMUST00000115028 Itgb5-001 33829665-33949146 protein_coding
  ENSMUST00000134262 Itgb5-004 33885026-33910585 processed_transcript
  ENSMUST00000148462 Itgb5-003 33891947-33899402 processed_transcript
  ENSMUST00000151930 Itgb5-005 33922486-33944148 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069345ENSMUST00000115028ENSMUST00000134262
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.891±0.00 15.835±8.82 N/A
ENSMUST00000115028 67.457±13.61 117.693±7.41 32.714±4.80 9.046±1.98 41.149±8.87 35.555±2.44 27.667±4.15 58.395±7.18 19.406±6.90 52.452±5.13 27.718±3.60 83.561±22.39 37.418±27.22 10.687±3.88
ENSMUST00000134262 N/A N/A N/A 6.534±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 17.153±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HE CIL_0008HE_0002 VISTA 16:33792411-34395018

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005178 IPI integrin binding
GO:0005515 IEA protein binding
GO:0005925 IDA focal adhesion
GO:0007155 IEA cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IEA integrin complex
GO:0009986 IEA cell surface
GO:0031252 IDA cell leading edge
GO:0034684 IEA integrin alphav-beta5 complex
GO:0035987 IEA endodermal cell differentiation
GO:0043149 IEA stress fiber assembly
GO:0043235 ISO receptor complex
GO:0070062 IEA extracellular vesicular exosome
GO:0090136 IEA epithelial cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012942 itgb5 integrin, beta 5 protein_coding Danio_rerio
ENSG00000082781 ITGB5 integrin, beta 5 protein_coding Homo_sapiens

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