C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, beta 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488466 ITGB5-010 ENSG00000082781 9606 - 3:124773819-124848451 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000488466
Transcript ID Adipose Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000488466 95.648±0.00 61.524±0.00 33.843±0.00 7.566±0.00 6.176±0.00 2.682±0.00 28.753±0.00 76.585±0.00 11.054±4.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HE CIL_0008HE_0001 VISTA 3:124285853-124889070

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0007155 IEA cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0008305 IEA integrin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069345 Itgb5-002 protein_coding Mus_musculus 0 712
ENSMUST00000115028 Itgb5-001 protein_coding Mus_musculus 0 712
ENSMUST00000134262 Itgb5-004 processed_transcript Mus_musculus 6e-35 152

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