C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 24
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070000 Arhgap24-006 ENSMUSG00000057315 10090 + 5:102845007-102897829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverOvaryPlacentaTestisENSMUST00000070000
Transcript ID Brain Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000070000 0.574±0.01 1.736±0.31 13.024±0.79 0.293±0.11 0.600±0.00 0.639±0.06 0.148±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J5 CIL_0006J5_0002 CGP 5:101832956-102897936
CIL_00093A CIL_00093A_0002 VISTA 5:102073255-102675763
CIL_000530 CIL_000530_0003 CGP 5:102481391-103211334

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0005925 IDA focal adhesion
GO:0007165 IEA signal transduction
GO:0030675 IMP Rac GTPase activator activity
GO:0032863 IMP activation of Rac GTPase activity
GO:0035021 IMP negative regulation of Rac protein signal transduction
GO:0035313 IMP wound healing, spreading of epidermal cells
GO:1900028 IMP negative regulation of ruffle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000137809 arhgap24-001 protein_coding Danio_rerio 0 372
ENSDART00000084495 arhgap24-003 protein_coding Danio_rerio 0 372
ENSDART00000140795 arhgap24-002 nonsense_mediated_decay Danio_rerio 2e-40 172
ENST00000249601 ARHGAP22-001 protein_coding Homo_sapiens 0 230
ENST00000264343 ARHGAP24-002 protein_coding Homo_sapiens 0 2545
ENST00000374170 ARHGAP22-006 protein_coding Homo_sapiens 2e-27 128
ENST00000374172 ARHGAP22-005 protein_coding Homo_sapiens 0 230
ENST00000395183 ARHGAP24-005 protein_coding Homo_sapiens 0 2335
ENST00000395184 ARHGAP24-001 protein_coding Homo_sapiens 0 2335
ENST00000417247 ARHGAP22-003 protein_coding Homo_sapiens 0 230
ENST00000417912 ARHGAP22-002 protein_coding Homo_sapiens 0 230
ENST00000435790 ARHGAP22-004 protein_coding Homo_sapiens 0 230
ENST00000460425 ARHGAP22-008 nonsense_mediated_decay Homo_sapiens 9.99995e-41 172
ENST00000489984 ARHGAP22-014 processed_transcript Homo_sapiens 5.00264e-43 178
ENST00000514229 ARHGAP24-006 protein_coding Homo_sapiens 0 1788

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