C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 98
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070165 Nup98-201 ENSMUSG00000063550 10090 - 7:102134204-102210120 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000070165
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000070165 4.445±1.29 5.786±0.86 2.921±1.43 2.353±1.55 1.836±0.43 2.787±2.21 1.333±0.88 8.366±0.00 0.567±0.00 5.330±2.14 2.662±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K0 CIL_0005K0_0002 CGP 7:102111266-102210120
CIL_0005K9 CIL_0005K9_0002 CGP 7:102134204-102238567

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000059 IEA protein import into nucleus, docking
GO:0000776 IEA kinetochore
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005635 IEA nuclear envelope
GO:0005654 IEA nucleoplasm
GO:0006260 IEA DNA replication
GO:0017056 IEA structural constituent of nuclear pore
GO:0031965 ISS nuclear membrane
GO:0034399 IEA nuclear periphery
GO:0042277 IEA peptide binding
GO:0042405 IEA nuclear inclusion body
GO:0044615 IEA nuclear pore nuclear basket
GO:0051028 IEA mRNA transport
GO:0051292 IEA nuclear pore complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324932 NUP98-001 protein_coding Homo_sapiens 0 2955
ENST00000355260 NUP98-013 protein_coding Homo_sapiens 0 2955
ENST00000359171 NUP98-201 protein_coding Homo_sapiens 0 4796
ENST00000397004 NUP98-002 protein_coding Homo_sapiens 0 2039
ENST00000397007 NUP98-004 protein_coding Homo_sapiens 0 3880
ENST00000397013 NUP98-018 nonsense_mediated_decay Homo_sapiens 0 658
ENST00000429801 NUP98-003 protein_coding Homo_sapiens 0 409
ENST00000461047 NUP98-006 retained_intron Homo_sapiens 0 318
ENST00000527104 NUP98-019 protein_coding Homo_sapiens 0 974
ENST00000529063 NUP98-015 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000529379 NUP98-017 protein_coding Homo_sapiens 0 466
ENST00000530516 NUP98-016 retained_intron Homo_sapiens 0 239
ENST00000532475 NUP98-012 protein_coding Homo_sapiens 0 387

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