C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein, LIM domain interacting
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070705 Rlim-002 ENSMUSG00000056537 10090 - X:103957163-103981284 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070705
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070705 3.084±0.49 2.560±1.00 4.561±1.47 3.186±0.48 2.352±0.79 2.183±0.90 1.994±0.41 3.417±0.74 2.802±1.03 4.352±0.46 1.099±0.37 4.386±2.02 21.524±11.19 2.443±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S9 CIL_0006S9_0002 CGP X:103697414-103981284
CIL_0006S6 CIL_0006S6_0002 CGP X:103957163-104201185

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0043433 IGI negative regulation of sequence-specific DNA binding transcription factor activity
GO:0060816 IDA random inactivation of X chromosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332687 RLIM-001 protein_coding Homo_sapiens 0 2213
ENST00000349225 RLIM-002 protein_coding Homo_sapiens 0 1589
ENST00000558657 CTD-2647E9.1-001 processed_pseudogene Homo_sapiens 0 1642

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