C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006S9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147100-ENSG00000131263 CGP 9606 X:74421461-74614617
GeneTranscriptPositionBiotype
ENSG00000131263 (RLIM)
ring finger protein, LIM domain interacting 		ENST00000332687 (RLIM-001) 74585217-74614617 protein_coding
ENST00000349225 (RLIM-002) 74590118-74614617 protein_coding
ENSG00000147100 (SLC16A2)
solute carrier family 16, member 2 (thyroid hormone transporter) 		ENST00000587091 (SLC16A2-001) 74421461-74533917 protein_coding
ENST00000590447 (SLC16A2-002) 74521120-74532608 protein_coding
ENSG00000230673 (PABPC1P3)
poly(A) binding protein, cytoplasmic 1 pseudogene 3 		ENST00000469174 (PABPC1P3-001) 74583088-74583546 processed_pseudogene
ENSG00000231206 (HNRNPA1P25)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 25 		ENST00000422644 (HNRNPA1P25-001) 74473017-74473953 processed_pseudogene
CIL_0006S9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033965-ENSMUSG00000056537 CGP 10090 X:103697414-103981284
GeneTranscriptPositionBiotype
ENSMUSG00000033965 (Slc16a2)
solute carrier family 16 (monocarboxylic acid transporters), member 2 		ENSMUST00000042664 (Slc16a2-001) 103697414-103821965 protein_coding
ENSMUST00000148684 (Slc16a2-002) 103706384-103734188 protein_coding
ENSMUST00000171837 (Slc16a2-003) 103699851-103706454 retained_intron
ENSMUSG00000056537 (Rlim)
ring finger protein, LIM domain interacting 		ENSMUST00000070705 (Rlim-002) 103957163-103981284 protein_coding
ENSMUST00000121153 (Rlim-001) 103957163-103981284 protein_coding
ENSMUST00000135101 (Rlim-003) 103977795-103981284 retained_intron
ENSMUSG00000081689 (Gm9166)
predicted gene 9166 		ENSMUST00000120293 (Gm9166-001) 103925536-103926984 processed_pseudogene
ENSMUSG00000082322 (Gm9164)
predicted gene 9164 		ENSMUST00000118700 (Gm9164-001) 103887599-103888612 processed_pseudogene
ENSMUSG00000083019 (Gm6222)
predicted pseudogene 6222 		ENSMUST00000120787 (Gm6222-001) 103763021-103763416 transcribed_processed_pseudogene
ENSMUST00000182143 (Gm6222-002) 103762917-103763545 processed_transcript
ENSMUSG00000083605 (Gm14893)
predicted gene 14893 		ENSMUST00000117904 (Gm14893-001) 103778693-103779000 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006S9_0001ENSG00000131263ENST00000332687ENST00000349225ENSG00000147100ENST00000587091ENST00000590447ENSG00000230673ENST00000469174ENSG00000231206ENST00000422644CIL_0006S9_0002ENSMUSG00000033965ENSMUST00000042664ENSMUST00000148684ENSMUST00000171837ENSMUSG00000056537ENSMUST00000070705ENSMUST00000121153ENSMUST00000135101ENSMUSG00000081689ENSMUST00000120293ENSMUSG00000082322ENSMUST00000118700ENSMUSG00000083019ENSMUST00000120787ENSMUST00000182143ENSMUSG00000083605ENSMUST00000117904
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006S9_0001ENSG00000131263ENST00000332687ENST00000349225ENSG00000147100ENST00000587091ENST00000590447ENSG00000230673ENST00000469174ENSG00000231206ENST00000422644CIL_0006S9_0002ENSMUSG00000033965ENSMUST00000042664ENSMUST00000148684ENSMUST00000171837ENSMUSG00000056537ENSMUST00000070705ENSMUST00000121153ENSMUSG00000081689ENSMUST00000120293ENSMUSG00000082322ENSMUST00000118700ENSMUSG00000083019ENSMUST00000120787ENSMUST00000182143ENSMUSG00000083605ENSMUST00000117904
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131263 ENST00000332687 6.448±0.00 4.132±0.00 5.179±0.00 12.359±1.80 4.287±0.27 3.791±0.21 3.250±0.48 4.450±0.56 4.507±2.73 5.325±0.22 2.539±0.53 4.656±1.32 2.390±1.27 3.612±0.41
ENST00000349225 N/A N/A N/A N/A 2.304±0.00 3.181±0.00 N/A 1.011±0.00 2.161±0.00 1.953±0.00 N/A 3.038±0.00 N/A N/A
ENSG00000147100 ENST00000587091 4.198±0.00 3.323±0.00 N/A 2.958±2.61 13.460±0.00 2.807±2.14 2.967±0.00 10.568±3.24 6.373±4.78 3.713±3.20 0.500±0.47 6.931±7.10 7.226±2.10 3.079±1.98
ENST00000590447 N/A N/A 0.867±0.00 1.544±0.00 0.645±0.00 0.667±0.00 0.112±0.00 N/A N/A 0.459±0.00 0.422±0.00 0.217±0.00 N/A N/A
ENSG00000230673 ENST00000469174 0.808±0.00 1.235±0.00 N/A 0.609±0.45 0.603±0.00 0.249±0.06 0.059±0.00 0.033±0.00 0.132±0.07 0.935±0.00 N/A 0.283±0.19 N/A 0.152±0.00
ENSG00000231206 ENST00000422644 0.078±0.00 N/A N/A 0.041±0.00 0.080±0.00 0.012±0.00 N/A N/A 0.040±0.00 N/A 0.024±0.00 0.028±0.00 0.063±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033965 ENSMUST00000042664 6.667±4.38 21.204±2.75 4.633±0.08 9.918±0.46 5.041±2.04 1.504±0.55 2.613±0.18 47.150±11.34 31.091±26.37 13.340±0.91 0.366±0.17 27.900±10.43 0.353±0.25 0.728±0.17
ENSMUST00000148684 N/A N/A N/A N/A N/A 2.198±0.00 N/A N/A N/A N/A N/A N/A 1.013±0.00 N/A
ENSMUST00000171837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.301±0.00 N/A
ENSMUSG00000056537 ENSMUST00000070705 3.084±0.49 2.560±1.00 4.561±1.47 3.186±0.48 2.352±0.79 2.183±0.90 1.994±0.41 3.417±0.74 2.802±1.03 4.352±0.46 1.099±0.37 4.386±2.02 21.524±11.19 2.443±0.39
ENSMUST00000121153 1.725±1.00 1.206±0.54 3.108±0.71 1.718±0.44 1.506±0.58 1.255±0.42 0.864±0.44 1.667±0.69 1.883±0.61 2.915±0.62 0.712±0.20 2.036±0.76 11.686±4.26 1.699±0.74
ENSMUST00000135101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081689 ENSMUST00000120293 N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 0.051±0.00 N/A
ENSMUSG00000082322 ENSMUST00000118700 0.050±0.01 0.063±0.00 0.024±0.00 0.424±0.00 0.150±0.14 0.060±0.00 0.029±0.00 0.039±0.01 0.039±0.03 0.036±0.00 N/A 0.229±0.11 0.244±0.23 0.046±0.02
ENSMUSG00000083019 ENSMUST00000120787 N/A 0.097±0.00 N/A N/A 0.131±0.00 0.301±0.00 N/A 0.211±0.00 0.163±0.07 N/A 0.314±0.00 N/A 0.023±0.00 N/A
ENSMUST00000182143 0.227±0.12 0.279±0.00 0.017±0.00 0.127±0.03 0.481±0.25 N/A 0.567±0.26 0.332±0.10 0.114±0.06 0.183±0.03 N/A 0.211±0.07 0.051±0.00 0.158±0.05
ENSMUSG00000083605 ENSMUST00000117904 N/A N/A N/A N/A N/A N/A N/A N/A 0.352±0.00 N/A N/A N/A N/A N/A

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