C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein, LIM domain interacting
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000349225 RLIM-002 ENSG00000131263 9606 - X:74590118-74614617 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverLungOvaryENST00000349225
Transcript ID Breast Colon Kidney Liver Lung Ovary
ENST00000349225 2.304±0.00 3.181±0.00 1.011±0.00 2.161±0.00 1.953±0.00 3.038±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S9 CIL_0006S9_0001 CGP X:74421461-74614617
CIL_0006S6 CIL_0006S6_0001 CGP X:74585217-74925485

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003714 NAS transcription corepressor activity
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0017053 NAS transcriptional repressor complex
GO:0045892 NAS negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0060816 IDA random inactivation of X chromosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070705 Rlim-002 protein_coding Mus_musculus 0 1589
ENSMUST00000121153 Rlim-001 protein_coding Mus_musculus 0 1589

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