C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycomb group ring finger 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071267 Pcgf5-202 ENSMUSG00000024805 10090 + 19:36379067-36456192 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderKidneyLiverLungOvaryPlacentaENSMUST00000071267
Transcript ID Adrenal Bladder Kidney Liver Lung Ovary Placenta
ENSMUST00000071267 1.779±0.31 6.062±0.00 0.880±0.00 2.080±0.79 1.396±0.00 1.833±0.69 23.412±7.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BY CIL_0008BY_0002 VISTA 19:35829039-36429586
CIL_0001IQ CIL_0001IQ_0002 CGP 19:36111965-36456192
CIL_00018O CIL_00018O_0002 CGP 19:36379067-36621135

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0031519 ISS PcG protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336126 PCGF5-001 protein_coding Homo_sapiens 0 896
ENST00000490164 PCGF5-002 processed_transcript Homo_sapiens 2.99878e-43 180
ENST00000496708 PCGF5-003 processed_transcript Homo_sapiens 7e-19 99
ENST00000543648 PCGF5-201 protein_coding Homo_sapiens 0 896
ENST00000614189 PCGF5-202 protein_coding Homo_sapiens 0 896

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