C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: src family associated phosphoprotein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071510 Skap1-009 ENSMUSG00000057058 10090 + 11:96464627-96758941 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071510
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071510 0.358±0.19 0.802±0.12 0.341±0.02 4.497±1.35 0.096±0.00 0.193±0.07 0.357±0.17 0.059±0.05 0.693±0.26 0.391±0.35 0.677±0.40 0.046±0.03 0.243±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005911 IDA cell-cell junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336915 SKAP1-001 protein_coding Homo_sapiens 0 859
ENST00000579336 SKAP1-005 protein_coding Homo_sapiens 0 372
ENST00000579476 SKAP1-007 retained_intron Homo_sapiens 0 300
ENST00000581400 SKAP1-006 nonsense_mediated_decay Homo_sapiens 0 287
ENST00000581419 SKAP1-004 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000584709 SKAP1-003 nonsense_mediated_decay Homo_sapiens 0 571
ENST00000584924 SKAP1-002 protein_coding Homo_sapiens 0 859

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