C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COMM domain containing 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071852 Commd7-001 ENSMUSG00000056941 10090 - 2:153616933-153632781 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071852
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071852 3.674±0.76 13.894±4.90 3.211±0.02 3.676±0.42 4.303±2.51 3.209±0.70 1.433±0.41 2.587±0.58 2.828±1.38 3.419±0.93 0.516±0.12 6.334±3.29 2.185±0.83 1.080±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A4 CIL_0008A4_0002 VISTA 2:153181176-153785061
CIL_0008NQ CIL_0008NQ_0002 VISTA 2:153260290-153861940
CIL_0008QN CIL_0008QN_0002 VISTA 2:153551282-154154369
CIL_00036W CIL_00036W_0002 CGP 2:153616933-153687730

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0032088 IEA negative regulation of NF-kappaB transcription factor activity
GO:0033209 IEA tumor necrosis factor-mediated signaling pathway
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0051059 IEA NF-kappaB binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278980 COMMD7-001 protein_coding Homo_sapiens 0 736
ENST00000446419 COMMD7-004 protein_coding Homo_sapiens 0 721
ENST00000474815 COMMD7-005 protein_coding Homo_sapiens 0 346
ENST00000610160 COMMD7-003 nonsense_mediated_decay Homo_sapiens 0 518

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