C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation specific factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071898 Cpsf1-201 ENSMUSG00000034022 10090 - 15:76595809-76607591 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071898 25.224±7.79 39.878±1.63 20.338±0.97 28.419±8.65 26.191±6.31 26.221±1.58 11.129±0.84 18.175±1.79 19.056±3.19 26.046±1.78 6.590±0.65 36.250±7.62 16.259±3.30 20.374±5.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_0006LZ CIL_0006LZ_0003 CGP 15:76576358-76607591
CIL_00026S CIL_00026S_0002 CGP 15:76595809-76616852

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003730 IEA mRNA 3'-UTR binding
GO:0005515 IEA protein binding
GO:0005847 ISS mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 IEA mRNA polyadenylation
GO:0006379 IEA mRNA cleavage

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000397477 CPSF1P1-005 processed_pseudogene Homo_sapiens 0 3051
ENST00000526271 CPSF1-005 retained_intron Homo_sapiens 0 396
ENST00000527916 CPSF1-011 retained_intron Homo_sapiens 0 377
ENST00000529288 CPSF1-007 retained_intron Homo_sapiens 0 198
ENST00000531042 CPSF1-015 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000531480 CPSF1-010 retained_intron Homo_sapiens 0 195
ENST00000532935 CPSF1-013 protein_coding Homo_sapiens 0 460
ENST00000533492 CPSF1-008 retained_intron Homo_sapiens 9.94922e-44 180
ENST00000616140 CPSF1-201 protein_coding Homo_sapiens 0 5025
ENST00000620219 CPSF1-001 protein_coding Homo_sapiens 0 5012
ENST00000622776 CPSF1-003 retained_intron Homo_sapiens 0 933

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