C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-minded homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072182 Sim2-201 ENSMUSG00000062713 10090 + 16:94085260-94127032 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072182
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072182 0.012±0.01 0.003±0.00 0.089±0.08 0.147±0.04 0.014±0.00 0.057±0.01 3.395±1.18 0.011±0.01 1.853±1.84 5.572±0.58 0.031±0.02 0.077±0.06 0.035±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Z7 CIL_0006Z7_0002 CGP 16:93919031-94127032
CIL_0006Z8 CIL_0006Z8_0002 CGP 16:94085260-94313563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007399 IEA nervous system development
GO:0009880 IMP embryonic pattern specification
GO:0030154 IEA cell differentiation
GO:0030324 IMP lung development
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046982 IPI protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290399 SIM2-001 protein_coding Homo_sapiens 0 2388
ENST00000431229 SIM2-004 protein_coding Homo_sapiens 0 1618
ENST00000460783 SIM2-003 processed_transcript Homo_sapiens 0 507
ENST00000481185 SIM2-002 retained_intron Homo_sapiens 0 2056

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