C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072452 Sys1-201 ENSMUSG00000045503 10090 + 2:164460971-164465508 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072452
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072452 45.241±1.14 117.826±14.91 20.612±3.66 27.995±3.17 79.255±39.80 81.963±13.74 21.271±4.32 49.427±7.66 35.422±19.20 51.384±13.08 10.589±0.93 75.327±36.88 18.180±4.43 11.168±0.30

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243918 SYS1-001 protein_coding Homo_sapiens 0 1044
ENST00000372727 SYS1-005 protein_coding Homo_sapiens 0 811
ENST00000414310 SYS1-002 protein_coding Homo_sapiens 0 811
ENST00000419593 SYS1-DBNDD2-001 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000426004 SYS1-006 protein_coding Homo_sapiens 0 337
ENST00000452133 SYS1-DBNDD2-003 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000453003 SYS1-003 protein_coding Homo_sapiens 0 545
ENST00000457307 SYS1-007 nonsense_mediated_decay Homo_sapiens 0 745
ENST00000458187 SYS1-DBNDD2-002 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000461890 SYS1-009 retained_intron Homo_sapiens 0 337
ENST00000479779 SYS1-008 processed_transcript Homo_sapiens 0 752

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