C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 138
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072847 Rnf138-202 ENSMUSG00000024317 10090 + 18:21001341-21028223 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072847
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072847 0.824±0.17 4.846±1.65 2.163±0.18 3.125±1.85 3.108±2.25 1.945±0.39 0.294±0.12 0.977±0.40 0.900±0.30 2.121±0.81 0.279±0.18 3.940±2.07 1.398±0.54 66.303±22.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003X2 CIL_0003X2_0002 CGP 18:20944625-21028223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016055 IEA Wnt signaling pathway
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257190 RNF138-002 protein_coding Homo_sapiens 0 309
ENST00000261593 RNF138-001 protein_coding Homo_sapiens 0 832
ENST00000502765 RNF138P1-001 processed_pseudogene Homo_sapiens 0 484
ENST00000578107 RNF138-007 protein_coding Homo_sapiens 0 507
ENST00000578914 RNF138-004 protein_coding Homo_sapiens 0 412
ENST00000580499 RNF138-008 protein_coding Homo_sapiens 0 603
ENST00000583733 RNF138-005 retained_intron Homo_sapiens 0 603
ENST00000585103 RNF138-003 processed_transcript Homo_sapiens 6e-28 128

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