C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal growth regulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074015 Negr1-001 ENSMUSG00000040037 10090 + 3:156561794-157316445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074015
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074015 4.154±0.11 1.240±0.69 1.868±0.12 19.180±3.99 3.097±0.69 0.748±0.18 0.469±0.11 1.107±0.15 0.057±0.05 0.904±0.05 0.074±0.04 0.989±0.36 0.179±0.11 0.141±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WX CIL_0000WX_0002 CGP 3:156561794-157548390

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005886 IDA plasma membrane
GO:0007626 IMP locomotory behavior
GO:0007631 IMP feeding behavior
GO:0010976 IDA positive regulation of neuron projection development
GO:0016337 IDA single organismal cell-cell adhesion
GO:0031225 IEA anchored component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306821 NEGR1-002 protein_coding Homo_sapiens 0 1748
ENST00000357731 NEGR1-001 protein_coding Homo_sapiens 0 1980
ENST00000434200 NEGR1-201 protein_coding Homo_sapiens 0 1746
ENST00000467479 NEGR1-004 processed_transcript Homo_sapiens 0 632
ENST00000474357 NEGR1-005 processed_transcript Homo_sapiens 0.00000000000005 81
ENST00000478526 NEGR1-003 processed_transcript Homo_sapiens 2.94273e-44 182

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