C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin VB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074157 Myo5b-001 ENSMUSG00000025885 10090 + 18:74442537-74771493 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074157
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074157 0.443±0.33 1.927±0.00 0.326±0.00 0.430±0.24 11.475±3.19 0.997±0.23 8.519±1.48 0.743±0.32 4.694±2.75 0.059±0.02 2.017±0.72 1.950±0.91 3.280±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001F3 CIL_0001F3_0002 CGP 18:74283090-74771493

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0005524 IEA ATP binding
GO:0008152 IEA metabolic process
GO:0016192 IEA vesicle-mediated transport
GO:0016459 IEA myosin complex
GO:0017137 IEA Rab GTPase binding
GO:0032439 IEA endosome localization
GO:0043234 IEA protein complex
GO:0045179 IEA apical cortex
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000285039 MYO5B-001 protein_coding Homo_sapiens 0 4268
ENST00000324581 MYO5B-006 protein_coding Homo_sapiens 0 3258
ENST00000431872 MYO5BP3-001 processed_pseudogene Homo_sapiens 0 1173
ENST00000449815 MYO5BP2-001 processed_pseudogene Homo_sapiens 0 1219
ENST00000587895 MYO5B-009 processed_transcript Homo_sapiens 0 542
ENST00000589568 MYO5B-010 retained_intron Homo_sapiens 6e-33 145
ENST00000590532 RP11-886H22.1-001 nonsense_mediated_decay Homo_sapiens 0 641
ENST00000592688 MYO5B-002 protein_coding Homo_sapiens 0 1615
ENST00000610994 RP11-4L24.1-001 processed_pseudogene Homo_sapiens 0 1208
ENST00000616031 MYO5B-201 protein_coding Homo_sapiens 0 2180

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