C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0001F3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069762-ENSDARG00000069762 CGP 7955 21:21501662-21672413
GeneTranscriptPositionBiotype
ENSDARG00000069762 (ccdc11)
coiled-coil domain containing 11
ENSDART00000101771 (ccdc11-201) 21501662-21672413 protein_coding
ENSDART00000129998 (ccdc11-001) 21664323-21672413 protein_coding
ENSDART00000139772 (ccdc11-002) 21667587-21671573 processed_transcript
ENSDARG00000093553 (myo5b)
myosin VB
ENSDART00000135062 (myo5b-202) 21543010-21560603 protein_coding
ENSDART00000141076 (myo5b-003) 21509147-21518273 protein_coding
ENSDART00000142707 (myo5b-001) 21508915-21662555 protein_coding
ENSDART00000144461 (myo5b-002) 21534012-21536685 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0001F3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035394-ENSMUSG00000025885 CGP 10090 18:74283090-74771493
GeneTranscriptPositionBiotype
ENSMUSG00000025885 (Myo5b)
myosin VB
ENSMUST00000074157 (Myo5b-001) 74442537-74771493 protein_coding
ENSMUST00000120161 (Myo5b-003) 74442605-74659060 processed_transcript
ENSMUST00000121875 (Myo5b-002) 74442607-74770805 protein_coding
ENSMUST00000122914 (Myo5b-010) 74714789-74717066 retained_intron
ENSMUST00000125751 (Myo5b-007) 74633177-74644023 processed_transcript
ENSMUST00000125882 (Myo5b-005) 74440936-74617023 protein_coding
ENSMUST00000135878 (Myo5b-006) 74440964-74512195 processed_transcript
ENSMUST00000140904 (Myo5b-008) 74707506-74717075 processed_transcript
ENSMUST00000146253 (Myo5b-009) 74715578-74722455 processed_transcript
ENSMUST00000154986 (Myo5b-004) 74733765-74771477 retained_intron
ENSMUST00000177366 (Myo5b-011) 74713619-74717068 protein_coding
ENSMUSG00000035394 (Ccdc11)
cilia and flagella associated protein 53
ENSMUST00000114895 (Ccdc11-001) 74283090-74359986 protein_coding
ENSMUST00000176435 (Ccdc11-002) 74283122-74359984 nonsense_mediated_decay
ENSMUST00000176766 (Ccdc11-004) 74294958-74300207 processed_transcript
ENSMUST00000177101 (Ccdc11-003) 74283162-74300194 nonsense_mediated_decay
ENSMUST00000177407 (Ccdc11-005) 74348986-74359930 processed_transcript
ENSMUSG00000086333 (1700120E14Rik)
RIKEN cDNA 1700120E14 gene
ENSMUST00000137034 (1700120E14Rik-002) 74525253-74531106 antisense
ENSMUST00000152951 (1700120E14Rik-001) 74525140-74531124 antisense
ENSMUSG00000095419 (Gm14328)
predicted gene 14328
ENSMUST00000122178 (Gm14328-001) 74303524-74303931 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001F3_0001ENSDARG00000069762ENSDART00000101771ENSDART00000129998ENSDART00000139772ENSDARG00000093553ENSDART00000135062ENSDART00000141076ENSDART00000142707ENSDART00000144461CIL_0001F3_0002ENSMUSG00000025885ENSMUST00000074157ENSMUST00000120161ENSMUST00000121875ENSMUST00000122914ENSMUST00000125751ENSMUST00000125882ENSMUST00000135878ENSMUST00000140904ENSMUST00000146253ENSMUST00000154986ENSMUST00000177366ENSMUSG00000035394ENSMUST00000114895ENSMUST00000176435ENSMUST00000176766ENSMUST00000177101ENSMUST00000177407ENSMUSG00000086333ENSMUST00000137034ENSMUST00000152951ENSMUSG00000095419ENSMUST00000122178
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001F3_0001ENSDARG00000069762ENSDART00000101771ENSDART00000129998ENSDARG00000093553ENSDART00000135062ENSDART00000141076ENSDART00000142707CIL_0001F3_0002ENSMUSG00000025885ENSMUST00000074157ENSMUST00000121875ENSMUST00000125751ENSMUST00000125882ENSMUST00000146253ENSMUST00000154986ENSMUSG00000035394ENSMUST00000114895ENSMUST00000176435ENSMUST00000176766ENSMUST00000177101ENSMUST00000177407ENSMUSG00000086333ENSMUST00000137034ENSMUST00000152951ENSMUSG00000095419ENSMUST00000122178
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000069762 ENSDART00000101771 N/A N/A N/A 0.122±0.09 N/A N/A N/A 0.314±0.00 N/A N/A 0.032±0.00 N/A N/A N/A
ENSDART00000129998 N/A N/A N/A 0.038±0.00 N/A N/A 0.018±0.00 0.410±0.15 N/A N/A N/A N/A N/A N/A
ENSDART00000139772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000093553 ENSDART00000135062 N/A N/A N/A N/A N/A N/A 0.037±0.00 0.166±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000141076 N/A N/A N/A N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142707 N/A N/A N/A 0.211±0.02 N/A N/A 0.010±0.00 0.515±0.00 N/A N/A 0.062±0.00 N/A N/A N/A
ENSDART00000144461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025885 ENSMUST00000074157 0.443±0.33 N/A 1.927±0.00 0.326±0.00 0.430±0.24 11.475±3.19 0.997±0.23 8.519±1.48 0.743±0.32 4.694±2.75 0.059±0.02 2.017±0.72 1.950±0.91 3.280±0.07
ENSMUST00000120161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000121875 1.183±0.01 0.861±0.28 2.792±0.09 3.463±4.57 0.551±0.18 7.946±1.52 1.877±0.10 9.966±3.02 1.103±0.55 4.111±0.61 0.132±0.02 2.102±0.63 3.328±1.85 8.442±1.94
ENSMUST00000122914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A N/A
ENSMUST00000125882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 N/A N/A N/A
ENSMUST00000135878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146253 N/A N/A N/A 137.063±0.00 N/A N/A N/A N/A N/A N/A N/A 50.699±0.00 52.773±11.64 258.087±0.00
ENSMUST00000154986 1.054±0.12 0.964±0.00 3.775±1.84 2.567±3.00 1.205±0.44 11.083±0.00 2.510±0.55 11.442±1.27 1.473±0.61 N/A 0.067±0.03 2.935±0.63 2.193±0.46 N/A
ENSMUST00000177366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035394 ENSMUST00000114895 0.033±0.00 N/A 0.123±0.00 0.178±0.10 0.053±0.00 N/A 0.049±0.03 0.054±0.00 0.032±0.02 0.170±0.03 0.045±0.03 2.144±3.00 0.481±0.49 108.439±179.15
ENSMUST00000176435 N/A N/A N/A 0.102±0.00 N/A N/A N/A N/A 0.018±0.01 N/A N/A 0.210±0.07 0.092±0.00 N/A
ENSMUST00000176766 N/A N/A N/A N/A 0.107±0.00 0.208±0.06 0.119±0.04 N/A N/A 0.495±0.15 0.217±0.05 0.429±0.11 N/A N/A
ENSMUST00000177101 N/A 0.152±0.05 N/A N/A N/A N/A N/A N/A 0.006±0.00 0.213±0.06 N/A 0.348±0.14 N/A N/A
ENSMUST00000177407 N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A 0.347±0.00 N/A
ENSMUSG00000086333 ENSMUST00000137034 N/A N/A 0.015±0.00 0.008±0.00 N/A 0.367±0.00 N/A 0.098±0.03 0.018±0.00 0.058±0.00 N/A N/A N/A 1.960±0.43
ENSMUST00000152951 N/A N/A 0.071±0.00 0.043±0.00 0.093±0.00 0.307±0.09 N/A 0.134±0.02 N/A 0.060±0.00 N/A N/A N/A 7.444±0.53
ENSMUSG00000095419 ENSMUST00000122178 N/A N/A 0.048±0.00 N/A N/A 0.302±0.00 N/A N/A 0.080±0.03 N/A N/A N/A 0.019±0.00 0.286±0.09

Loading