C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001F3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069762-ENSDARG00000069762 CGP 7955 21:21501662-21672413
GeneTranscriptPositionBiotype
ENSDARG00000069762 (ccdc11)
coiled-coil domain containing 11 		ENSDART00000101771 (ccdc11-201) 21501662-21672413 protein_coding
ENSDART00000129998 (ccdc11-001) 21664323-21672413 protein_coding
ENSDART00000139772 (ccdc11-002) 21667587-21671573 processed_transcript
ENSDARG00000093553 (myo5b)
myosin VB 		ENSDART00000135062 (myo5b-202) 21543010-21560603 protein_coding
ENSDART00000141076 (myo5b-003) 21509147-21518273 protein_coding
ENSDART00000142707 (myo5b-001) 21508915-21662555 protein_coding
ENSDART00000144461 (myo5b-002) 21534012-21536685 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001F3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035394-ENSMUSG00000025885 CGP 10090 18:74283090-74771493
GeneTranscriptPositionBiotype
ENSMUSG00000025885 (Myo5b)
myosin VB 		ENSMUST00000074157 (Myo5b-001) 74442537-74771493 protein_coding
ENSMUST00000120161 (Myo5b-003) 74442605-74659060 processed_transcript
ENSMUST00000121875 (Myo5b-002) 74442607-74770805 protein_coding
ENSMUST00000122914 (Myo5b-010) 74714789-74717066 retained_intron
ENSMUST00000125751 (Myo5b-007) 74633177-74644023 processed_transcript
ENSMUST00000125882 (Myo5b-005) 74440936-74617023 protein_coding
ENSMUST00000135878 (Myo5b-006) 74440964-74512195 processed_transcript
ENSMUST00000140904 (Myo5b-008) 74707506-74717075 processed_transcript
ENSMUST00000146253 (Myo5b-009) 74715578-74722455 processed_transcript
ENSMUST00000154986 (Myo5b-004) 74733765-74771477 retained_intron
ENSMUST00000177366 (Myo5b-011) 74713619-74717068 protein_coding
ENSMUSG00000035394 (Ccdc11)
cilia and flagella associated protein 53 		ENSMUST00000114895 (Ccdc11-001) 74283090-74359986 protein_coding
ENSMUST00000176435 (Ccdc11-002) 74283122-74359984 nonsense_mediated_decay
ENSMUST00000176766 (Ccdc11-004) 74294958-74300207 processed_transcript
ENSMUST00000177101 (Ccdc11-003) 74283162-74300194 nonsense_mediated_decay
ENSMUST00000177407 (Ccdc11-005) 74348986-74359930 processed_transcript
ENSMUSG00000086333 (1700120E14Rik)
RIKEN cDNA 1700120E14 gene 		ENSMUST00000137034 (1700120E14Rik-002) 74525253-74531106 antisense
ENSMUST00000152951 (1700120E14Rik-001) 74525140-74531124 antisense
ENSMUSG00000095419 (Gm14328)
predicted gene 14328 		ENSMUST00000122178 (Gm14328-001) 74303524-74303931 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001F3_0001ENSDARG00000069762ENSDART00000101771ENSDART00000129998ENSDART00000139772ENSDARG00000093553ENSDART00000135062ENSDART00000141076ENSDART00000142707ENSDART00000144461CIL_0001F3_0002ENSMUSG00000025885ENSMUST00000074157ENSMUST00000120161ENSMUST00000121875ENSMUST00000122914ENSMUST00000125751ENSMUST00000125882ENSMUST00000135878ENSMUST00000140904ENSMUST00000146253ENSMUST00000154986ENSMUST00000177366ENSMUSG00000035394ENSMUST00000114895ENSMUST00000176435ENSMUST00000176766ENSMUST00000177101ENSMUST00000177407ENSMUSG00000086333ENSMUST00000137034ENSMUST00000152951ENSMUSG00000095419ENSMUST00000122178
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001F3_0001ENSDARG00000069762ENSDART00000101771ENSDART00000129998ENSDARG00000093553ENSDART00000135062ENSDART00000141076ENSDART00000142707CIL_0001F3_0002ENSMUSG00000025885ENSMUST00000074157ENSMUST00000121875ENSMUST00000125751ENSMUST00000125882ENSMUST00000146253ENSMUST00000154986ENSMUSG00000035394ENSMUST00000114895ENSMUST00000176435ENSMUST00000176766ENSMUST00000177101ENSMUST00000177407ENSMUSG00000086333ENSMUST00000137034ENSMUST00000152951ENSMUSG00000095419ENSMUST00000122178
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000069762 ENSDART00000101771 N/A N/A N/A 0.122±0.09 N/A N/A N/A 0.314±0.00 N/A N/A 0.032±0.00 N/A N/A N/A
ENSDART00000129998 N/A N/A N/A 0.038±0.00 N/A N/A 0.018±0.00 0.410±0.15 N/A N/A N/A N/A N/A N/A
ENSDART00000139772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000093553 ENSDART00000135062 N/A N/A N/A N/A N/A N/A 0.037±0.00 0.166±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000141076 N/A N/A N/A N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142707 N/A N/A N/A 0.211±0.02 N/A N/A 0.010±0.00 0.515±0.00 N/A N/A 0.062±0.00 N/A N/A N/A
ENSDART00000144461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025885 ENSMUST00000074157 0.443±0.33 N/A 1.927±0.00 0.326±0.00 0.430±0.24 11.475±3.19 0.997±0.23 8.519±1.48 0.743±0.32 4.694±2.75 0.059±0.02 2.017±0.72 1.950±0.91 3.280±0.07
ENSMUST00000120161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000121875 1.183±0.01 0.861±0.28 2.792±0.09 3.463±4.57 0.551±0.18 7.946±1.52 1.877±0.10 9.966±3.02 1.103±0.55 4.111±0.61 0.132±0.02 2.102±0.63 3.328±1.85 8.442±1.94
ENSMUST00000122914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A N/A
ENSMUST00000125882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 N/A N/A N/A
ENSMUST00000135878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146253 N/A N/A N/A 137.063±0.00 N/A N/A N/A N/A N/A N/A N/A 50.699±0.00 52.773±11.64 258.087±0.00
ENSMUST00000154986 1.054±0.12 0.964±0.00 3.775±1.84 2.567±3.00 1.205±0.44 11.083±0.00 2.510±0.55 11.442±1.27 1.473±0.61 N/A 0.067±0.03 2.935±0.63 2.193±0.46 N/A
ENSMUST00000177366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035394 ENSMUST00000114895 0.033±0.00 N/A 0.123±0.00 0.178±0.10 0.053±0.00 N/A 0.049±0.03 0.054±0.00 0.032±0.02 0.170±0.03 0.045±0.03 2.144±3.00 0.481±0.49 108.439±179.15
ENSMUST00000176435 N/A N/A N/A 0.102±0.00 N/A N/A N/A N/A 0.018±0.01 N/A N/A 0.210±0.07 0.092±0.00 N/A
ENSMUST00000176766 N/A N/A N/A N/A 0.107±0.00 0.208±0.06 0.119±0.04 N/A N/A 0.495±0.15 0.217±0.05 0.429±0.11 N/A N/A
ENSMUST00000177101 N/A 0.152±0.05 N/A N/A N/A N/A N/A N/A 0.006±0.00 0.213±0.06 N/A 0.348±0.14 N/A N/A
ENSMUST00000177407 N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A 0.347±0.00 N/A
ENSMUSG00000086333 ENSMUST00000137034 N/A N/A 0.015±0.00 0.008±0.00 N/A 0.367±0.00 N/A 0.098±0.03 0.018±0.00 0.058±0.00 N/A N/A N/A 1.960±0.43
ENSMUST00000152951 N/A N/A 0.071±0.00 0.043±0.00 0.093±0.00 0.307±0.09 N/A 0.134±0.02 N/A 0.060±0.00 N/A N/A N/A 7.444±0.53
ENSMUSG00000095419 ENSMUST00000122178 N/A N/A 0.048±0.00 N/A N/A 0.302±0.00 N/A N/A 0.080±0.03 N/A N/A N/A 0.019±0.00 0.286±0.09

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