C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A/B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074669 Hnrnpab-001 ENSMUSG00000020358 10090 - 11:51600100-51606847 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074669
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074669 32.506±13.95 49.749±2.81 85.828±54.68 16.286±2.13 36.793±2.12 17.514±1.45 24.400±4.51 53.869±37.94 40.515±2.03 22.446±1.34 54.892±16.47 52.811±20.75 18.324±3.93

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0001837 IDA epithelial to mesenchymal transition
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003723 IPI RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0030529 ISS ribonucleoprotein complex
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355836 HNRNPAB-003 protein_coding Homo_sapiens 0 1700
ENST00000358344 HNRNPAB-001 protein_coding Homo_sapiens 0 981
ENST00000406003 HNRNPABP1-001 processed_pseudogene Homo_sapiens 0 678
ENST00000476487 PHYKPL-002 retained_intron Homo_sapiens 0 329
ENST00000504796 HNRNPAB-009 retained_intron Homo_sapiens 0 418
ENST00000504898 HNRNPAB-008 protein_coding Homo_sapiens 0 941
ENST00000506259 HNRNPAB-004 protein_coding Homo_sapiens 0 1670
ENST00000506339 HNRNPAB-005 protein_coding Homo_sapiens 0 987
ENST00000514633 HNRNPAB-002 protein_coding Homo_sapiens 0 1685
ENST00000515193 HNRNPAB-006 protein_coding Homo_sapiens 0 1764
ENST00000615932 HNRNPAB-201 protein_coding Homo_sapiens 0 902

Loading