C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bardet-Biedl syndrome 5 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074963 Bbs5-001 ENSMUSG00000063145 10090 + 2:69647208-69667571 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074963
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074963 0.824±0.31 4.629±1.97 2.911±0.33 0.658±0.23 0.410±0.04 0.801±0.32 0.754±0.38 1.318±0.61 1.286±0.00 1.413±0.27 1.521±1.03 3.707±0.89 20.460±2.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HC CIL_0008HC_0002 VISTA 2:69119794-69721610
CIL_00063E CIL_00063E_0002 CGP 2:69424340-69667571

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001103 IEA RNA polymerase II repressing transcription factor binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0015031 IEA protein transport
GO:0032266 IEA phosphatidylinositol-3-phosphate binding
GO:0034464 IDA BBSome
GO:0036064 IDA ciliary basal body
GO:0042384 IEA cilium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295240 BBS5-001 protein_coding Homo_sapiens 0 1264
ENST00000392663 BBS5-002 protein_coding Homo_sapiens 0 669
ENST00000443151 BBS5-005 nonsense_mediated_decay Homo_sapiens 0 442
ENST00000472667 BBS5-003 retained_intron Homo_sapiens 0 499
ENST00000513963 RP11-724O16.1-001 protein_coding Homo_sapiens 0 1098

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