C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bardet-Biedl syndrome 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392663 BBS5-002 ENSG00000163093 9606 + 2:169479483-169506655 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverLungOvaryPlacentaTestisENST00000392663
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000392663 0.796±0.00 0.719±0.00 1.579±0.00 0.428±0.19 1.192±0.00 0.535±0.00 1.507±0.06 1.429±0.48 1.084±0.14 13.232±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063E CIL_00063E_0001 CGP 2:169127109-169506655

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0001947 ISS heart looping
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007601 IEA visual perception
GO:0015031 IEA protein transport
GO:0032266 IDA phosphatidylinositol-3-phosphate binding
GO:0032402 ISS melanosome transport
GO:0034464 IDA BBSome
GO:0036064 ISS ciliary basal body
GO:0042384 IMP cilium assembly
GO:0044458 ISS motile cilium assembly
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112286 Bbs5-003 protein_coding Mus_musculus 0 1164
ENSMUST00000074963 Bbs5-001 protein_coding Mus_musculus 0 669
ENSMUST00000134659 Bbs5-002 nonsense_mediated_decay Mus_musculus 0 496
ENSMUST00000127806 Bbs5-008 protein_coding Mus_musculus 0 316
ENSMUST00000143165 Bbs5-007 retained_intron Mus_musculus 0 267

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