C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired related homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075805 Prrx1-002 ENSMUSG00000026586 10090 - 1:163245119-163313672 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075805
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075805 0.999±0.08 0.619±0.00 1.570±0.19 0.382±0.14 2.467±0.25 1.174±0.00 0.408±0.14 0.038±0.04 1.174±0.00 4.837±1.03 2.107±0.86 0.351±0.29 0.199±0.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002053 IGI positive regulation of mesenchymal cell proliferation
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030326 IGI embryonic limb morphogenesis
GO:0042472 IGI inner ear morphogenesis
GO:0042474 IMP middle ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045880 IGI positive regulation of smoothened signaling pathway
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048844 IGI artery morphogenesis
GO:0051216 IMP cartilage development
GO:0060021 IMP palate development
GO:0071837 IPI HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000239461 PRRX1-002 protein_coding Homo_sapiens 0 1090
ENST00000367760 PRRX1-001 protein_coding Homo_sapiens 0 2532
ENST00000476867 PRRX1-003 processed_transcript Homo_sapiens 0 521
ENST00000485529 PRRX1-007 processed_transcript Homo_sapiens 0 464
ENST00000495280 PRRX1-004 processed_transcript Homo_sapiens 0 752
ENST00000496573 PRRX1-006 processed_transcript Homo_sapiens 0 337
ENST00000497230 PRRX1-005 protein_coding Homo_sapiens 0 1090
ENST00000553786 PRRX1-008 processed_transcript Homo_sapiens 0 425

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