C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 35
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075845 Arhgap35-001 ENSMUSG00000058230 10090 - 7:16493719-16614993 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075845
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075845 4.954±3.84 5.339±2.77 5.605±3.87 12.034±5.96 3.214±1.47 7.598±3.05 1.034±0.24 2.631±0.67 1.606±1.41 3.549±1.74 0.624±0.12 8.666±2.96 1.094±0.74 1.712±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G1 CIL_0008G1_0002 VISTA 7:16104746-16706411
CIL_00062F CIL_00062F_0002 CGP 7:16455721-16614993

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0003677 IEA DNA binding
GO:0005096 TAS GTPase activator activity
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007229 TAS integrin-mediated signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008360 IDA regulation of cell shape
GO:0010976 IGI positive regulation of neuron projection development
GO:0015629 IDA actin cytoskeleton
GO:0030900 IMP forebrain development
GO:0035024 IDA negative regulation of Rho protein signal transduction
GO:0043010 IMP camera-type eye development
GO:0043116 IMP negative regulation of vascular permeability
GO:0043547 IEA positive regulation of GTPase activity
GO:0045892 IEA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000404338 ARHGAP35-001 protein_coding Homo_sapiens 0 5781
ENST00000595822 ARHGAP35-005 retained_intron Homo_sapiens 0 697
ENST00000599284 ARHGAP35-007 retained_intron Homo_sapiens 0 544
ENST00000614079 ARHGAP35-201 protein_coding Homo_sapiens 0 5781
ENST00000615647 ARHGAP35-202 protein_coding Homo_sapiens 0 2953

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