C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00062F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000015876-ENSDARG00000062577 CGP 7955 15:8494653-8898422
GeneTranscriptPositionBiotype
ENSDARG00000015876 (npas3b)
neuronal PAS domain protein 3b 		ENSDART00000101511 (npas3b-201) 8494653-8568063 protein_coding
ENSDART00000140213 (npas3b-001) 8499133-8591977 protein_coding
ENSDARG00000062577 (arhgap35a)
Rho GTPase activating protein 35a 		ENSDART00000090675 (arhgap35a-201) 8739850-8800496 protein_coding
ENSDART00000154171 (arhgap35a-001) 8739845-8898422 protein_coding
ENSDARG00000097094 (si:ch211-13k20.2)
si:ch211-13k20.2 		ENSDART00000153807 (si:ch211-13k20.2-001) 8897896-8900345 antisense

Danio rerio Ensembl (Zv9)

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CIL_00062F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001988-ENSMUSG00000058230 CGP 10090 7:16455721-16614993
GeneTranscriptPositionBiotype
ENSMUSG00000001988 (Npas1)
neuronal PAS domain protein 1 		ENSMUST00000002053 (Npas1-201) 16455721-16476780 protein_coding
ENSMUSG00000058230 (Arhgap35)
Rho GTPase activating protein 35 		ENSMUST00000075845 (Arhgap35-001) 16493719-16614993 protein_coding
ENSMUST00000171937 (Arhgap35-201) 16496252-16614937 protein_coding
ENSMUST00000188133 (Arhgap35-002) 16494468-16497767 protein_coding
ENSMUSG00000099423 (RP23-321G17.2)
predicted gene, 17826 		ENSMUST00000189720 (RP23-321G17.2-001) 16498732-16499529 processed_pseudogene
ENSMUSG00000100583 (RP24-490A22.3)
predicted gene 29443 		ENSMUST00000186708 (RP24-490A22.3-002) 16614040-16632643 antisense
ENSMUST00000190297 (RP24-490A22.3-001) 16613824-16632544 antisense
ENSMUSG00000101135 (RP24-82J4.3)
predicted gene, 17981 		ENSMUST00000191109 (RP24-82J4.3-001) 16514400-16515138 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00062F_0001ENSDARG00000015876ENSDART00000101511ENSDART00000140213ENSDARG00000062577ENSDART00000090675ENSDART00000154171ENSDARG00000097094ENSDART00000153807CIL_00062F_0002ENSMUSG00000001988ENSMUST00000002053ENSMUSG00000058230ENSMUST00000075845ENSMUST00000171937ENSMUST00000188133ENSMUSG00000099423ENSMUST00000189720ENSMUSG00000100583ENSMUST00000186708ENSMUST00000190297ENSMUSG00000101135ENSMUST00000191109
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00062F_0001ENSDARG00000015876ENSDART00000101511ENSDART00000140213ENSDARG00000062577ENSDART00000090675ENSDART00000154171ENSDARG00000097094ENSDART00000153807CIL_00062F_0002ENSMUSG00000001988ENSMUST00000002053ENSMUSG00000058230ENSMUST00000075845ENSMUST00000171937ENSMUSG00000099423ENSMUST00000189720ENSMUSG00000100583ENSMUST00000186708ENSMUST00000190297ENSMUSG00000101135ENSMUST00000191109
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015876 ENSDART00000101511 N/A N/A N/A 4.311±1.08 N/A N/A 0.057±0.06 0.053±0.00 0.020±0.00 N/A 0.124±0.00 N/A N/A N/A
ENSDART00000140213 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000062577 ENSDART00000090675 N/A N/A N/A 10.178±2.90 N/A N/A 7.100±2.26 2.874±0.73 1.154±0.00 N/A 1.686±0.00 N/A N/A N/A
ENSDART00000154171 N/A N/A N/A 2.999±1.72 N/A N/A 2.882±0.58 1.554±0.62 0.475±0.00 N/A N/A N/A N/A N/A
ENSDARG00000097094 ENSDART00000153807 N/A N/A N/A N/A N/A N/A 6.350±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001988 ENSMUST00000002053 0.055±0.00 N/A N/A 2.140±0.71 0.109±0.00 N/A 0.074±0.03 0.191±0.00 0.038±0.02 N/A 0.116±0.03 0.158±0.07 0.089±0.03 N/A
ENSMUSG00000058230 ENSMUST00000075845 4.954±3.84 5.339±2.77 5.605±3.87 12.034±5.96 3.214±1.47 7.598±3.05 1.034±0.24 2.631±0.67 1.606±1.41 3.549±1.74 0.624±0.12 8.666±2.96 1.094±0.74 1.712±0.22
ENSMUST00000171937 N/A 11.040±2.30 N/A 13.648±0.00 4.486±1.20 5.023±0.85 N/A N/A 2.404±0.11 4.932±0.00 1.429±0.24 6.832±1.93 1.153±0.71 5.288±1.37
ENSMUST00000188133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099423 ENSMUST00000189720 0.162±0.09 0.202±0.11 0.120±0.01 0.279±0.13 0.443±0.21 0.332±0.23 0.209±0.07 0.160±0.11 0.152±0.10 0.289±0.15 0.124±0.00 0.292±0.14 0.175±0.18 0.307±0.14
ENSMUSG00000100583 ENSMUST00000186708 0.203±0.05 0.214±0.00 N/A 2.221±0.00 0.358±0.00 N/A N/A 0.118±0.00 N/A N/A N/A 0.278±0.00 0.570±0.21 N/A
ENSMUST00000190297 N/A N/A N/A 0.223±0.00 N/A N/A 0.127±0.00 N/A N/A N/A N/A 0.187±0.00 0.020±0.00 N/A
ENSMUSG00000101135 ENSMUST00000191109 0.182±0.07 0.362±0.23 0.228±0.10 0.477±0.15 0.376±0.31 0.446±0.21 0.138±0.00 0.112±0.04 0.076±0.04 0.442±0.06 0.068±0.00 0.527±0.43 0.083±0.04 0.251±0.15

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