C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog gene family, member T1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077451 Rhot1-001 ENSMUSG00000017686 10090 + 11:80209019-80266812 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000077451
Transcript ID Adipose Adrenal Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077451 2.216±0.22 1.722±0.00 1.713±0.00 0.775±0.11 0.917±0.04 1.240±0.12 1.481±0.00 1.632±0.59 2.090±0.64 8.016±3.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VO CIL_0000VO_0002 CGP 11:80209019-80355955

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005509 IEA calcium ion binding
GO:0005525 IEA GTP binding
GO:0005739 IDA mitochondrion
GO:0006184 IEA GTP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0019725 ISS cellular homeostasis
GO:0031307 ISS integral component of mitochondrial outer membrane
GO:0047497 ISS mitochondrion transport along microtubule
GO:0097345 ISS mitochondrial outer membrane permeabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333942 RHOT1-001 protein_coding Homo_sapiens 0 2531
ENST00000354266 RHOT1-004 protein_coding Homo_sapiens 0 2510
ENST00000358365 RHOT1-002 protein_coding Homo_sapiens 0 3731
ENST00000366423 RHOT1P2-001 processed_pseudogene Homo_sapiens 0 499
ENST00000394692 RHOT1-008 protein_coding Homo_sapiens 0 2651
ENST00000436571 RHOT1P3-001 processed_pseudogene Homo_sapiens 0 492
ENST00000545287 RHOT1-015 protein_coding Homo_sapiens 0 2531
ENST00000578205 RHOT1-007 nonsense_mediated_decay Homo_sapiens 0 2326
ENST00000580392 RHOT1-012 protein_coding Homo_sapiens 0 544
ENST00000580976 RHOT1-010 processed_transcript Homo_sapiens 0 680
ENST00000581031 RHOT1-005 nonsense_mediated_decay Homo_sapiens 0 2531
ENST00000581094 RHOT1-006 protein_coding Homo_sapiens 0 2525
ENST00000581148 RHOT1-013 protein_coding Homo_sapiens 0 464
ENST00000581567 RHOT1-011 retained_intron Homo_sapiens 0 313
ENST00000582468 RHOT1P1-001 processed_pseudogene Homo_sapiens 0 472
ENST00000582586 RHOT1-016 processed_transcript Homo_sapiens 7e-21 104
ENST00000582602 RHOT1-018 protein_coding Homo_sapiens 0 684
ENST00000583994 RHOT1-003 nonsense_mediated_decay Homo_sapiens 0 2481
ENST00000584692 RHOT1-014 nonsense_mediated_decay Homo_sapiens 0 401
ENST00000584852 RHOT1-017 protein_coding Homo_sapiens 0 228

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