C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ras homolog gene family, member T1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017686 Rhot1 10090 + 11:80209019-80267907 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017831 Rhot1-002 80209119-80266767 protein_coding
  ENSMUST00000055056 Rhot1-201 80209055-80267907 protein_coding
  ENSMUST00000077451 Rhot1-001 80209019-80266812 protein_coding
  ENSMUST00000092857 Rhot1-004 80209084-80267486 protein_coding
  ENSMUST00000134148 Rhot1-007 80209147-80246403 retained_intron
  ENSMUST00000134894 Rhot1-003 80242611-80266744 protein_coding
  ENSMUST00000135947 Rhot1-005 80249674-80266738 processed_transcript
  ENSMUST00000151518 Rhot1-008 80252497-80254828 retained_intron
  ENSMUST00000154362 Rhot1-006 80209113-80252037 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017831ENSMUST00000055056ENSMUST00000077451ENSMUST00000092857ENSMUST00000134148ENSMUST00000134894ENSMUST00000135947
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017831 2.147±0.37 N/A 5.670±0.26 4.563±0.28 2.391±0.44 1.256±0.61 N/A 2.840±0.66 3.205±1.56 2.105±0.45 3.776±0.81 8.410±1.02 5.770±2.37 4.261±0.00
ENSMUST00000055056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.884±0.00 N/A N/A
ENSMUST00000077451 2.216±0.22 1.722±0.00 N/A N/A 1.713±0.00 0.775±0.11 N/A N/A 0.917±0.04 1.240±0.12 1.481±0.00 1.632±0.59 2.090±0.64 8.016±3.97
ENSMUST00000092857 4.173±0.15 4.796±1.04 4.365±0.86 5.514±2.72 3.524±0.83 3.206±0.70 2.994±0.41 5.161±0.49 3.363±0.66 4.396±0.50 2.708±0.53 4.002±1.11 3.427±2.39 N/A
ENSMUST00000134148 N/A N/A N/A 4.681±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.584±0.39 3.378±0.00
ENSMUST00000134894 7.223±0.48 4.247±1.17 8.971±0.03 5.039±1.40 5.594±1.36 1.655±0.14 7.749±1.39 3.021±0.39 2.887±0.41 4.433±0.86 3.834±0.60 3.841±0.83 3.544±1.47 8.427±3.33
ENSMUST00000135947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.809±1.19 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VO CIL_0000VO_0002 CGP 11:80209019-80355955

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005739 IDA mitochondrion
GO:0006184 IEA GTP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0019725 ISS cellular homeostasis
GO:0031307 ISS integral component of mitochondrial outer membrane
GO:0047497 ISS mitochondrion transport along microtubule
GO:0097345 ISS mitochondrial outer membrane permeabilization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018130 rhot1a ras homolog gene family, member T1a protein_coding Danio_rerio
ENSDARG00000070316 rhot1b ras homolog gene family, member T1b protein_coding Danio_rerio
ENSDARG00000096023 RHOT1 (3 of 3) ras homolog family member T1 protein_coding Danio_rerio
ENSG00000126858 RHOT1 ras homolog family member T1 protein_coding Homo_sapiens

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