C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog family member T1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000333942 RHOT1-001 ENSG00000126858 9606 + 17:32142454-32225770 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLungOvaryPlacentaTestisENST00000333942
Transcript ID Adipose Brain Breast Colon Heart Lung Ovary Placenta Testis
ENST00000333942 2.682±0.00 4.145±0.00 1.732±0.34 2.558±0.21 1.444±0.00 2.305±0.00 3.771±0.79 2.824±0.18 2.069±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VO CIL_0000VO_0001 CGP 17:32142454-32324661

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003924 IEA GTPase activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005741 IEA mitochondrial outer membrane
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA:TAS small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IDA:IEA membrane
GO:0019725 IEA:IMP cellular homeostasis
GO:0031307 IDA integral component of mitochondrial outer membrane
GO:0047497 IMP mitochondrion transport along microtubule
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0097345 IMP mitochondrial outer membrane permeabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092857 Rhot1-004 protein_coding Mus_musculus 0 3395
ENSMUST00000055056 Rhot1-201 protein_coding Mus_musculus 0 2531
ENSMUST00000017831 Rhot1-002 protein_coding Mus_musculus 0 2531
ENSMUST00000077451 Rhot1-001 protein_coding Mus_musculus 0 2531
ENSMUST00000134894 Rhot1-003 protein_coding Mus_musculus 0 1474
ENSMUST00000154362 Rhot1-006 retained_intron Mus_musculus 0 1046
ENSMUST00000135947 Rhot1-005 processed_transcript Mus_musculus 0 787
ENSMUST00000134148 Rhot1-007 retained_intron Mus_musculus 0 569
ENSMUST00000151518 Rhot1-008 retained_intron Mus_musculus 0 433

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