C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8994
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077886 Gm8994-201 ENSMUSG00000094973 10090 + 6:136328543-136329778 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonKidneyLiverTestisENSMUST00000077886
Transcript ID Adipose Bladder Brain Colon Kidney Liver Testis
ENSMUST00000077886 0.027±0.00 0.007±0.00 0.003±0.00 0.042±0.00 0.040±0.01 0.005±0.00 0.027±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096F CIL_00096F_0002 VISTA 6:136167244-136769677
CIL_00082T CIL_00082T_0002 VISTA 6:136168119-136771874

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000014887 eif4a3-001 protein_coding Danio_rerio 0 1101
ENSDART00000154277 eif4a3-002 nonsense_mediated_decay Danio_rerio 0 259
ENST00000269349 EIF4A3-001 protein_coding Homo_sapiens 0 1408
ENST00000570625 EIF4A3-010 retained_intron Homo_sapiens 2e-22 110
ENST00000575957 EIF4A3-004 retained_intron Homo_sapiens 0 420
ENST00000575978 EIF4A3-002 retained_intron Homo_sapiens 2e-25 122
ENST00000576547 EIF4A3-005 protein_coding Homo_sapiens 0 418
ENST00000576573 EIF4A3-009 retained_intron Homo_sapiens 0 403

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