C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane channel-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358864 TMC2-001 ENSG00000149488 9606 + 20:2536607-2641784 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryTestisENST00000358864
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000358864 0.208±0.00 0.040±0.00 0.011±0.00 0.089±0.00 0.157±0.00 0.016±0.00 0.029±0.02 0.494±0.00 0.054±0.00 0.026±0.00 0.130±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143
CIL_0000FW CIL_0000FW_0001 CGP 20:2536607-2658393

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IEA voltage-gated calcium channel activity
GO:0016021 IEA integral component of membrane
GO:0032426 IEA stereocilium bundle tip
GO:0050910 IEA detection of mechanical stimulus involved in sensory perception of sound
GO:0060005 IEA vestibular reflex
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077988 Tmc2-001 protein_coding Mus_musculus 0 2695
ENSMUST00000166774 Tmc2-201 protein_coding Mus_musculus 0 2693

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