C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078049 Nfatc1-202 ENSMUSG00000033016 10090 - 18:80606205-80713071 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverMuscleOvaryPlacentaENSMUST00000078049
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Muscle Ovary Placenta
ENSMUST00000078049 0.992±0.16 0.591±0.07 0.463±0.00 0.161±0.06 2.790±0.94 0.998±0.13 0.755±0.00 0.264±0.01 3.160±1.34 0.621±0.18 0.554±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y9 CIL_0007Y9_0002 VISTA 18:80030119-80632361
CIL_0008HP CIL_0008HP_0002 VISTA 18:80487642-81088565
CIL_0008IX CIL_0008IX_0002 VISTA 18:80511437-81112175
CIL_0008KF CIL_0008KF_0002 VISTA 18:80518312-81119092

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001837 IMP epithelial to mesenchymal transition
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006816 IMP calcium ion transport
GO:0007507 IMP heart development
GO:0010628 IDA positive regulation of gene expression
GO:0030316 IGI osteoclast differentiation
GO:0035556 ISO intracellular signal transduction
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 ISO positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000052521 nfatc1-001 protein_coding Danio_rerio 0 424
ENST00000253506 NFATC1-001 protein_coding Homo_sapiens 0 2241
ENST00000318065 NFATC1-003 protein_coding Homo_sapiens 0 2050
ENST00000329101 NFATC1-009 protein_coding Homo_sapiens 0 2001
ENST00000397790 NFATC1-002 protein_coding Homo_sapiens 7.9874e-44 183
ENST00000427363 NFATC1-007 protein_coding Homo_sapiens 0 2159
ENST00000542384 NFATC1-006 protein_coding Homo_sapiens 0 1906
ENST00000586434 NFATC1-010 protein_coding Homo_sapiens 0 1748
ENST00000587635 NFATC1-005 protein_coding Homo_sapiens 0 1458
ENST00000591814 NFATC1-004 protein_coding Homo_sapiens 0 1938
ENST00000592223 NFATC1-011 protein_coding Homo_sapiens 0 1748

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