C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRAF family member-associated Nf-kappa B activator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078074 Tank-201 ENSMUSG00000064289 10090 + 2:61578586-61654171 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLungMuscleOvaryPlacentaTestisENSMUST00000078074
Transcript ID Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000078074 3.555±2.38 0.927±0.00 0.833±0.00 1.229±0.00 0.992±0.00 2.008±1.22 1.932±0.00 0.876±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KZ CIL_0005KZ_0002 CGP 2:60750193-61654171
CIL_0008JH CIL_0008JH_0002 VISTA 2:61356142-61956716
CIL_0005L0 CIL_0005L0_0002 CGP 2:61578585-61800376

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0007249 IDA I-kappaB kinase/NF-kappaB signaling
GO:0031625 IEA ubiquitin protein ligase binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259075 TANK-001 protein_coding Homo_sapiens 0 1149
ENST00000392749 TANK-002 protein_coding Homo_sapiens 0 1107
ENST00000402568 TANK-014 protein_coding Homo_sapiens 0 569
ENST00000405852 TANK-004 protein_coding Homo_sapiens 0 1107
ENST00000429217 TANK-016 protein_coding Homo_sapiens 0 630
ENST00000432002 TANK-015 protein_coding Homo_sapiens 0 462
ENST00000437623 TANK-023 protein_coding Homo_sapiens 0 736
ENST00000439442 TANK-020 protein_coding Homo_sapiens 0 285
ENST00000468831 TANK-013 retained_intron Homo_sapiens 0 826

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