C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRAF family member-associated NFKB activator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392749 TANK-002 ENSG00000136560 9606 + 2:161160297-161236172 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392749
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392749 12.796±0.00 7.773±0.00 4.214±1.61 5.114±0.47 4.246±1.80 3.411±1.80 6.105±2.81 5.675±1.71 9.376±6.33 3.143±2.65 4.815±1.18 2.916±0.72 4.531±1.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KZ CIL_0005KZ_0001 CGP 2:160272151-161236221
CIL_0008JH CIL_0008JH_0001 VISTA 2:160938384-161538940
CIL_0005L0 CIL_0005L0_0001 CGP 2:161136908-161411717

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0007165 TAS signal transduction
GO:0007249 IEA I-kappaB kinase/NF-kappaB signaling
GO:0031625 IPI ubiquitin protein ligase binding
GO:0045087 TAS innate immune response
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112495 Tank-002 protein_coding Mus_musculus 0 1205
ENSMUST00000112494 Tank-003 protein_coding Mus_musculus 0 1151
ENSMUST00000112502 Tank-001 protein_coding Mus_musculus 0 1122
ENSMUST00000078074 Tank-201 protein_coding Mus_musculus 0 1107
ENSMUST00000112501 Tank-202 protein_coding Mus_musculus 0 1107
ENSMUST00000141544 Tank-004 processed_transcript Mus_musculus 0 737
ENSMUST00000136688 Tank-006 processed_transcript Mus_musculus 0 564
ENSMUST00000154693 Tank-009 processed_transcript Mus_musculus 0 472

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