C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TRAF family member-associated Nf-kappa B activator
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000064289 Tank 10090 + 2:61578585-61654171 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000078074 Tank-201 61578586-61654171 protein_coding
  ENSMUST00000112494 Tank-003 61593136-61651799 protein_coding
  ENSMUST00000112495 Tank-002 61593077-61654171 protein_coding
  ENSMUST00000112501 Tank-202 61593097-61654171 protein_coding
  ENSMUST00000112502 Tank-001 61578585-61654171 protein_coding
  ENSMUST00000136688 Tank-006 61578611-61654090 processed_transcript
  ENSMUST00000139533 Tank-005 61593164-61615140 processed_transcript
  ENSMUST00000141544 Tank-004 61593165-61654090 processed_transcript
  ENSMUST00000143515 Tank-007 61627721-61646190 processed_transcript
  ENSMUST00000145632 Tank-008 61578611-61643907 processed_transcript
  ENSMUST00000154693 Tank-009 61643831-61649977 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078074ENSMUST00000112494ENSMUST00000112495ENSMUST00000112501ENSMUST00000112502ENSMUST00000141544ENSMUST00000154693
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078074 N/A N/A N/A N/A 3.555±2.38 0.927±0.00 N/A 0.833±0.00 N/A 1.229±0.00 0.992±0.00 2.008±1.22 1.932±0.00 0.876±0.00
ENSMUST00000112494 2.073±0.49 0.905±0.18 3.572±0.75 2.292±0.50 2.140±0.57 0.790±0.16 0.794±0.28 0.734±0.21 2.311±1.46 1.532±0.26 0.402±0.00 1.433±0.92 1.104±0.23 0.888±0.18
ENSMUST00000112495 8.189±2.29 3.211±1.77 10.148±2.16 6.336±1.46 3.641±1.08 3.354±0.85 3.495±0.79 2.844±0.21 5.604±2.90 3.624±0.47 4.211±0.33 4.045±2.46 4.880±1.22 2.215±1.11
ENSMUST00000112501 N/A N/A N/A N/A N/A N/A N/A N/A 2.675±0.91 N/A 0.825±0.09 N/A 1.133±0.29 0.737±0.13
ENSMUST00000112502 N/A N/A N/A N/A 2.468±0.00 N/A N/A 1.055±0.11 0.626±0.00 N/A 1.373±0.00 1.018±0.00 N/A N/A
ENSMUST00000141544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.980±0.00
ENSMUST00000154693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.819±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KZ CIL_0005KZ_0002 CGP 2:60750193-61654171
CIL_0008JH CIL_0008JH_0002 VISTA 2:61356142-61956716
CIL_0005L0 CIL_0005L0_0002 CGP 2:61578585-61800376

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0007249 IDA I-kappaB kinase/NF-kappaB signaling
GO:0031625 IEA ubiquitin protein ligase binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067723 tank TRAF family member-associated NFKB activator protein_coding Danio_rerio
ENSDARG00000090402 tank TRAF family member-associated NFKB activator protein_coding Danio_rerio
ENSG00000136560 TANK TRAF family member-associated NFKB activator protein_coding Homo_sapiens

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