C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ELKS/RAB6-interacting/CAST family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079582 Erc1-005 ENSMUSG00000030172 10090 - 6:119772706-119848102 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C1 CIL_0006C1_0002 CGP 6:119479668-119848167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0017137 IDA Rab GTPase binding
GO:0030165 ISS PDZ domain binding
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347735 ERC1-008 nonsense_mediated_decay Homo_sapiens 0 1365
ENST00000355446 ERC1-011 protein_coding Homo_sapiens 0 1162
ENST00000360905 ERC1-014 protein_coding Homo_sapiens 0 1162
ENST00000397203 ERC1-201 protein_coding Homo_sapiens 0 1365
ENST00000440394 ERC1-013 nonsense_mediated_decay Homo_sapiens 0 1365
ENST00000536573 ERC1-003 processed_transcript Homo_sapiens 0 298
ENST00000538971 ERC1-016 retained_intron Homo_sapiens 0 1027
ENST00000539007 ERC1-017 retained_intron Homo_sapiens 0 396
ENST00000542302 ERC1-010 nonsense_mediated_decay Homo_sapiens 0 1162
ENST00000543086 ERC1-001 protein_coding Homo_sapiens 0 1365
ENST00000545948 ERC1-004 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000546231 ERC1-015 protein_coding Homo_sapiens 0 1162
ENST00000589028 ERC1-202 protein_coding Homo_sapiens 0 1162
ENST00000592048 ERC1-006 protein_coding Homo_sapiens 0 1439
ENST00000611180 ERC1-203 protein_coding Homo_sapiens 0 342

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