C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ELKS/RAB6-interacting/CAST family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000589028 ERC1-202 ENSG00000082805 9606 + 12:1027747-1495924 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000589028
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000589028 5.518±0.00 5.710±0.00 1.691±0.00 2.425±0.00 2.552±0.00 1.821±0.84 2.564±1.39 2.220±0.52 0.984±0.00 2.138±0.00 4.313±1.66 3.259±1.24 3.735±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TY CIL_0007TY_0001 VISTA 12:564896-1165613

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0007252 IDA I-kappaB phosphorylation
GO:0007275 NAS multicellular organismal development
GO:0008385 IDA IkappaB kinase complex
GO:0015031 IEA protein transport
GO:0017137 ISS Rab GTPase binding
GO:0030165 ISS PDZ domain binding
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0042734 TAS presynaptic membrane
GO:0043522 NAS leucine zipper domain binding
GO:0045202 ISS synapse
GO:0051092 TAS positive regulation of NF-kappaB transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000184864 Erc1-009 protein_coding Mus_musculus 0 4298
ENSMUST00000032279 Erc1-201 protein_coding Mus_musculus 0 4244
ENSMUST00000183703 Erc1-001 protein_coding Mus_musculus 0 4244
ENSMUST00000184838 Erc1-002 nonsense_mediated_decay Mus_musculus 0 3166
ENSMUST00000183911 Erc1-007 protein_coding Mus_musculus 0 2386
ENSMUST00000185139 Erc1-003 nonsense_mediated_decay Mus_musculus 0 1932
ENSMUST00000183880 Erc1-004 nonsense_mediated_decay Mus_musculus 0 1796
ENSMUST00000185143 Erc1-008 nonsense_mediated_decay Mus_musculus 0 1733
ENSMUST00000183872 Erc1-011 processed_transcript Mus_musculus 0 1683
ENSMUST00000079582 Erc1-005 protein_coding Mus_musculus 0 1162
ENSMUST00000184320 Erc1-010 nonsense_mediated_decay Mus_musculus 0 1079
ENSMUST00000183741 Erc1-006 retained_intron Mus_musculus 0 976

Loading