C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ELKS/RAB6-interacting/CAST family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000347735 ERC1-008 ENSG00000082805 9606 + 12:991238-1491567 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TY CIL_0007TY_0001 VISTA 12:564896-1165613

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0007252 IDA I-kappaB phosphorylation
GO:0007275 NAS multicellular organismal development
GO:0008385 IDA IkappaB kinase complex
GO:0015031 IEA protein transport
GO:0017137 ISS Rab GTPase binding
GO:0030165 ISS PDZ domain binding
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0042734 TAS presynaptic membrane
GO:0043522 NAS leucine zipper domain binding
GO:0045202 ISS synapse
GO:0051092 TAS positive regulation of NF-kappaB transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183880 Erc1-004 nonsense_mediated_decay Mus_musculus 0 4174
ENSMUST00000185139 Erc1-003 nonsense_mediated_decay Mus_musculus 0 3203
ENSMUST00000183911 Erc1-007 protein_coding Mus_musculus 0 3042
ENSMUST00000184838 Erc1-002 nonsense_mediated_decay Mus_musculus 0 2292
ENSMUST00000032279 Erc1-201 protein_coding Mus_musculus 0 1797
ENSMUST00000183703 Erc1-001 protein_coding Mus_musculus 0 1796
ENSMUST00000184864 Erc1-009 protein_coding Mus_musculus 0 1794
ENSMUST00000079582 Erc1-005 protein_coding Mus_musculus 0 1365
ENSMUST00000183872 Erc1-011 processed_transcript Mus_musculus 0 1247
ENSMUST00000185143 Erc1-008 nonsense_mediated_decay Mus_musculus 0 1131
ENSMUST00000183741 Erc1-006 retained_intron Mus_musculus 0 977
ENSMUST00000184320 Erc1-010 nonsense_mediated_decay Mus_musculus 0 972

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