C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic polyadenylation element binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079754 Cpeb3-001 ENSMUSG00000039652 10090 - 19:37021291-37207462 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMusclePlacentaENSMUST00000079754
Transcript ID Bladder Brain Liver Muscle Placenta
ENSMUST00000079754 0.545±0.20 1.640±0.00 0.708±0.18 1.792±0.20 0.245±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018R CIL_00018R_0002 CGP 19:36926079-37208601
CIL_00018Q CIL_00018Q_0002 CGP 19:37021291-37222139

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0000900 IDA translation repressor activity, nucleic acid binding
GO:0003723 IDA RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0006412 IDA translation
GO:0007616 IMP long-term memory
GO:0008135 IDA translation factor activity, nucleic acid binding
GO:0017148 IMP:IDA negative regulation of translation
GO:0030014 ISS CCR4-NOT complex
GO:0030425 IDA dendrite
GO:0035613 IDA RNA stem-loop binding
GO:0035925 IDA mRNA 3'-UTR AU-rich region binding
GO:0043005 IDA neuron projection
GO:0044822 IEA poly(A) RNA binding
GO:0045202 IDA synapse
GO:0045727 IDA positive regulation of translation
GO:0048167 IMP regulation of synaptic plasticity
GO:0060213 ISS positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0060998 IMP regulation of dendritic spine development
GO:0060999 IDA positive regulation of dendritic spine development
GO:0061158 ISS 3'-UTR-mediated mRNA destabilization
GO:0071230 IDA cellular response to amino acid stimulus
GO:0097440 IDA apical dendrite
GO:1900153 ISS positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:1900248 IDA negative regulation of cytoplasmic translational elongation
GO:1900365 IDA positive regulation of mRNA polyadenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000115341 protein_coding Danio_rerio 0 309
ENSDART00000084354 cpeb3-001 protein_coding Danio_rerio 0.000000001 71
ENST00000265997 CPEB3-002 protein_coding Homo_sapiens 0 2567
ENST00000412050 CPEB3-001 protein_coding Homo_sapiens 0 2610
ENST00000614585 CPEB3-201 protein_coding Homo_sapiens 0 2567

Loading